mitoODEdata

DOI: 10.18129/B9.bioc.mitoODEdata    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mitoODEdata.

Experimental data associated to the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

Bioconductor version: 3.12

This package contains the experimental data (assay annotation, siRNA annotation, time-lapse cell counts) associated to the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay". The data ultimately come from the Mitocheck assay reported in "Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes" (Neumann, Walter et al, Nature 2010).

Author: Gregoire Pau

Maintainer: Gregoire Pau <pau.gregoire at gene.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mitoODEdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mitoODEdata")

 

PDF	R Script	Mitoode data
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, Genome
Version	1.26.0
License	LGPL
Depends	R (>= 2.14.0)
Imports	methods, graphics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mitoODEdata_1.26.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/mitoODEdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mitoODEdata
Package Short Url	https://bioconductor.org/packages/mitoODEdata/
Package Downloads Report	Download Stats