This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see signet.
Bioconductor version: 3.12
An R package to detect selection in biological pathways. Using gene selection scores and biological pathways data, one can search for high-scoring subnetworks of genes within pathways and test their significance.
Author: Alexandre Gouy <alexandre.gouy at iee.unibe.ch>
Maintainer: <>
Citation (from within R,
enter citation("signet")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("signet")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | DifferentialExpression, GeneExpression, GraphAndNetwork, KEGG, NetworkEnrichment, Pathways, Software |
Version | 1.10.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (3 years) |
License | GPL-2 |
Depends | R (>= 3.4.0) |
Imports | graph, igraph, RBGL, graphics, utils, stats, methods |
LinkingTo | |
Suggests | graphite, BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS 10.13 (High Sierra) | |
Source Repository | git clone https://git.bioconductor.org/packages/signet |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/signet |
Package Short Url | https://bioconductor.org/packages/signet/ |
Package Downloads Report | Download Stats |
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