This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see signet.
Bioconductor version: 3.10
An R package to detect selection in biological pathways. Using gene selection scores and biological pathways data, one can search for high-scoring subnetworks of genes within pathways and test their significance.
Author: Alexandre Gouy [aut, cre]
Maintainer: Alexandre Gouy <alexandre.gouy at iee.unibe.ch>
Citation (from within R,
enter citation("signet")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("signet")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("signet")
HTML | R Script | signet tutorial |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, GeneExpression, GraphAndNetwork, KEGG, NetworkEnrichment, Pathways, Software |
Version | 1.6.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (2 years) |
License | GPL-2 |
Depends | R (>= 3.4.0) |
Imports | graph, igraph, RBGL, graphics, utils, stats, methods |
LinkingTo | |
Suggests | graphite, BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | signet_1.6.0.tar.gz |
Windows Binary | signet_1.6.0.zip |
Mac OS X 10.11 (El Capitan) | signet_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/signet |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/signet |
Package Short Url | https://bioconductor.org/packages/signet/ |
Package Downloads Report | Download Stats |
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