XCIR

DOI: 10.18129/B9.bioc.XCIR    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see XCIR.

XCI-inference

Bioconductor version: 3.12

Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.

Author: Renan Sauteraud, Dajiang Liu

Maintainer: Renan Sauteraud <rxs575 at psu.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XCIR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XCIR")

 

HTML	R Script	Introduction to XCIR
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, RNASeq, Sequencing, Software, StatisticalMethod
Version	1.4.0
In Bioconductor since	BioC 3.10 (R-3.6) (1.5 years)
License	GPL-2
Depends	methods
Imports	stats, utils, data.table, IRanges, VariantAnnotation, seqminer, ggplot2, biomaRt, readxl, S4Vectors
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/SRenan/XCIR
BugReports	https://github.com/SRenan/XCIR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	XCIR_1.4.0.tar.gz
Windows Binary	XCIR_1.4.0.zip
macOS 10.13 (High Sierra)	XCIR_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/XCIR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/XCIR
Package Short Url	https://bioconductor.org/packages/XCIR/
Package Downloads Report	Download Stats