plotBBCellFrac {XCIR} | R Documentation |
Plot cell fraction estimates
Description
Plot cell fraction estimates from list of known XCI genes
Usage
plotBBCellFrac(xci_dt, xcig = NULL, gene_names = "",
color_col = NULL, xist = TRUE)
Arguments
xci_dt |
A data.table . The data to be used for the estimate
of skewing (i.e: limited to XCI genes).
|
xcig |
A logical . If xci_dt was not subset for training
genes only, setting xcig to TRUE will filter the data.
|
gene_names |
A character . If left blank, only genes that are
further than 20
to "all", all genes will be named. Set to "none" to remove all annotations.
Alternately, a character vector can be passed to annotate specific
genes of interest.
|
color_col |
A character . One of the columns of xci_dt can
be used to color genes.
|
xist |
A logical . Set to TRUE to display XIST in addition to
the training genes.
|
Details
This function is mostly used in betaBinomXI
to ensure that the cell
fraction is estimated properly. However, it can be used from the output
of betaBinomXI
to troubleshoot estimation issues.
Value
The plot object in class ggplot
.
[Package
XCIR version 1.4.0
Index]