Onassis

DOI: 10.18129/B9.bioc.Onassis    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see Onassis.

OnASSIs Ontology Annotation and Semantic SImilarity software

Bioconductor version: 3.12

A package that allows the annotation of text with ontology terms (mainly from OBO ontologies) and the computation of semantic similarity measures based on the structure of the ontology between different annotated samples.

Author: Eugenia Galeota

Maintainer: Eugenia Galeota <eugenia.galeota at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Onassis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Onassis")

 

HTML	R Script	Onassis: Ontology Annotation and Semantic Similarity software
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Clustering, DataImport, GeneTarget, Network, Software
Version	1.12.0
In Bioconductor since	BioC 3.6 (R-3.4) (3.5 years)
License	GPL-2
Depends	R (>= 4.0), rJava, OnassisJavaLibs
Imports	GEOmetadb, RSQLite, data.table, methods, tools, utils, AnnotationDbi, RCurl, stats, DT, data.table, knitr, Rtsne, dendextend, clusteval, ggplot2, ggfortify
LinkingTo
Suggests	BiocStyle, rmarkdown, htmltools, org.Hs.eg.db, gplots, GenomicRanges, kableExtra
SystemRequirements	Java (>= 1.8)
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Onassis_1.12.0.tar.gz
Windows Binary	Onassis_1.12.0.zip
macOS 10.13 (High Sierra)	Onassis_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Onassis
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Onassis
Package Short Url	https://bioconductor.org/packages/Onassis/
Package Downloads Report	Download Stats