GGBase

DOI: 10.18129/B9.bioc.GGBase    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GGBase.

GGBase infrastructure for genetics of gene expression package GGtools

Bioconductor version: 3.12

infrastructure

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GGBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GGBase")

 

HTML	R Script	GGBase -- infrastructure for GGtools, genetics of gene expression
PDF		Reference Manual
Text		NEWS

Details

biocViews	Genetics, Infrastructure, Software
Version	3.52.0
In Bioconductor since	BioC 2.2 (R-2.7) (13 years)
License	Artistic-2.0
Depends	R (>= 2.14), methods, snpStats
Imports	limma, genefilter, Biobase, BiocGenerics(>= 0.35.3), S4Vectors, IRanges, Matrix, AnnotationDbi, digest, GenomicRanges, SummarizedExperiment
LinkingTo
Suggests	GGtools, illuminaHumanv1.db, knitr
SystemRequirements
Enhances
URL
Depends On Me	ceu1kg, ceu1kgv, ceuhm3, dsQTL, GGdata, GGtools, hmyriB36, yri1kgv
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GGBase_3.52.0.tar.gz
Windows Binary	GGBase_3.52.0.zip
macOS 10.13 (High Sierra)	GGBase_3.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GGBase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GGBase
Package Short Url	https://bioconductor.org/packages/GGBase/
Package Downloads Report	Download Stats