CHARGE

DOI: 10.18129/B9.bioc.CHARGE    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CHARGE.

CHARGE: CHromosome Assessment in R from Gene Expression data

Bioconductor version: 3.12

Identifies genomic duplications or deletions from gene expression data.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at sahmri.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CHARGE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Clustering, GeneExpression, Software
Version	1.10.0
In Bioconductor since	BioC 3.7 (R-3.5) (3 years)
License	GPL-2
Depends	R (>= 3.5), GenomicRanges, methods
Imports	SummarizedExperiment, FactoMineR, factoextra, IRanges, graphics, modes, parallel, plyr, cluster, diptest, stats, matrixStats
LinkingTo
Suggests	roxygen2, EnsDb.Hsapiens.v86
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/CHARGE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CHARGE
Package Short Url	https://bioconductor.org/packages/CHARGE/
Package Downloads Report	Download Stats