CHARGE

DOI: 10.18129/B9.bioc.CHARGE    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see CHARGE.

CHARGE: CHromosome Assessment in R from Gene Expression data

Bioconductor version: 3.10

Identifies genomic duplications or deletions from gene expression data.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at sahmri.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CHARGE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHARGE")

 

PDF	R Script	CHARGE_Example
PDF		Reference Manual

Details

biocViews	Clustering, GeneExpression, Software
Version	1.6.0
In Bioconductor since	BioC 3.7 (R-3.5) (2 years)
License	GPL-2
Depends	R (>= 3.5), GenomicRanges, methods
Imports	SummarizedExperiment, FactoMineR, factoextra, IRanges, graphics, modes, parallel, plyr, cluster, diptest, stats, matrixStats
LinkingTo
Suggests	roxygen2, EnsDb.Hsapiens.v86
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CHARGE_1.6.0.tar.gz
Windows Binary	CHARGE_1.6.0.zip
Mac OS X 10.11 (El Capitan)	CHARGE_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CHARGE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CHARGE
Package Short Url	https://bioconductor.org/packages/CHARGE/
Package Downloads Report	Download Stats