RIPSeekerData

DOI: 10.18129/B9.bioc.RIPSeekerData    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RIPSeekerData.

test data for RIPSeeker

Bioconductor version: Release (3.11)

The RIP-seq data in BAM format are the test data for the package RIPSeeker. The data correspond to two RIP-seq experiments, namely PRC2 and CCNT1. Raw data from NCBI Gene Expression Omnibus under accession numbers GSE17064 for PRC2 and in-house for CCNT1.

Author: Yue Li

Maintainer: Alejandro Reyes <reyes at embl.de>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RIPSeekerData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RIPSeekerData")

 

PDF	R Script	RIP-seq datasets for testing RIPSeeker package
PDF		Reference Manual

Details

biocViews	ExperimentData, GEO, Genome, RIPSeqData, SequencingData, StemCell
Version	1.24.0
License	GPL-2
Depends	RIPSeeker
Imports
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RIPSeekerData_1.24.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/RIPSeekerData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RIPSeekerData
Package Short Url	https://bioconductor.org/packages/RIPSeekerData/
Package Downloads Report	Download Stats