Bioconductor version: Release (3.11)
The algorithm is based on the non-negative tucker decomposition (NTD2) of nnTensor.
Author: Koki Tsuyuzaki [aut, cre], Kozo Nishida [aut]
Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>
Citation (from within R,
enter citation("scTensor")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("scTensor")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scTensor")
HTML | R Script | scTensor |
HTML | R Script | scTensor: 1. Data format and ID conversion |
HTML | R Script | scTensor: 2. Interpretation of HTML report |
HTML | R Script | scTensor: 3. Simulation of CCI |
HTML | R Script | scTensor: 4. Reanalysis of the results of scTensor |
Reference Manual | ||
Text | NEWS |
biocViews | DimensionReduction, GeneExpression, SingleCell, Software |
Version | 1.4.3 |
In Bioconductor since | BioC 3.9 (R-3.6) (1.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0) |
Imports | methods, RSQLite, igraph, S4Vectors, plotly, reactome.db, AnnotationDbi, SummarizedExperiment, SingleCellExperiment, nnTensor, rTensor, abind, plotrix, heatmaply, tagcloud, rmarkdown, BiocStyle, knitr, AnnotationHub, MeSHDbi, grDevices, graphics, stats, utils, outliers, Category, meshr, GOstats, ReactomePA, DOSE, crayon, checkmate, BiocManager, visNetwork, schex, ggplot2 |
LinkingTo | |
Suggests | testthat, LRBase.Hsa.eg.db, MeSH.Hsa.eg.db, LRBase.Mmu.eg.db, MeSH.Mmu.eg.db, LRBaseDbi, Seurat, Homo.sapiens |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | scTensor_1.4.3.tar.gz |
Windows Binary | scTensor_1.4.3.zip |
macOS 10.13 (High Sierra) | scTensor_1.4.3.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/scTensor |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scTensor |
Package Short Url | https://bioconductor.org/packages/scTensor/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |
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