CGHnormaliter

DOI: 10.18129/B9.bioc.CGHnormaliter    

Normalization of array CGH data with imbalanced aberrations.

Bioconductor version: Release (3.11)

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Author: Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

Maintainer: Bart P.P. van Houte <bvhoute at few.vu.nl>

Citation (from within R, enter citation("CGHnormaliter")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGHnormaliter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGHnormaliter")

 

PDF R Script CGHnormaliter
PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, Software
Version 1.42.0
In Bioconductor since BioC 2.5 (R-2.10) (11 years)
License GPL (>= 3)
Depends CGHcall(>= 2.17.0), CGHbase(>= 1.15.0)
Imports Biobase, CGHbase, CGHcall, methods, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CGHnormaliter_1.42.0.tar.gz
Windows Binary CGHnormaliter_1.42.0.zip
macOS 10.13 (High Sierra) CGHnormaliter_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CGHnormaliter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CGHnormaliter
Package Short Url https://bioconductor.org/packages/CGHnormaliter/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: