CGHbase

DOI: 10.18129/B9.bioc.CGHbase    

CGHbase: Base functions and classes for arrayCGH data analysis.

Bioconductor version: Release (3.11)

Contains functions and classes that are needed by arrayCGH packages.

Author: Sjoerd Vosse, Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGHbase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Infrastructure, Microarray, Software
Version	1.48.0
In Bioconductor since	BioC 2.3 (R-2.8) (12 years)
License	GPL
Depends	R (>= 2.10), methods, Biobase(>= 2.5.5), marray
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	https://github.com/tgac-vumc/CGHbase
BugReports	https://github.com/tgac-vumc/CGHbase/issues
Depends On Me	CGHcall, CGHnormaliter, CGHregions, GeneBreak, sigaR
Imports Me	CGHnormaliter, plrs, QDNAseq
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CGHbase_1.48.0.tar.gz
Windows Binary	CGHbase_1.48.0.zip
macOS 10.13 (High Sierra)	CGHbase_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CGHbase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CGHbase
Package Short Url	https://bioconductor.org/packages/CGHbase/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.11	Source Archive