This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see TSCAN.
Bioconductor version: 3.10
TSCAN enables users to easily construct and tune pseudotemporal cell ordering as well as analyzing differentially expressed genes. TSCAN comes with a user-friendly GUI written in shiny. More features will come in the future.
Author: Zhicheng Ji, Hongkai Ji
Maintainer: Zhicheng Ji <zji4 at jhu.edu>
Citation (from within R,
enter citation("TSCAN")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("TSCAN")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TSCAN")
R Script | TSCAN: Tools for Single-Cell ANalysis | |
Reference Manual |
biocViews | GUI, GeneExpression, Software, Visualization |
Version | 1.24.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (5.5 years) |
License | GPL(>=2) |
Depends | R (>= 2.10.0) |
Imports | ggplot2, shiny, plyr, grid, fastICA, igraph, combinat, mgcv, mclust, gplots |
LinkingTo | |
Suggests | knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | TSCAN_1.24.0.tar.gz |
Windows Binary | TSCAN_1.24.0.zip |
Mac OS X 10.11 (El Capitan) | TSCAN_1.24.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TSCAN |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TSCAN |
Package Short Url | https://bioconductor.org/packages/TSCAN/ |
Package Downloads Report | Download Stats |
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