singlegeneplot {TSCAN} | R Documentation |
plot expression values of individual genes against pseudotime axis
singlegeneplot(geneexpr, TSCANorder, cell_size = 2)
geneexpr |
The gene expression values. Names should agree with the pseudotime information. |
TSCANorder |
The output of function |
cell_size |
Size of cells in the plot. |
This function plots the expression values of individual genes against given pseudotime
ggplot2 object.
Zhicheng Ji, Hongkai Ji <zji4@zji4.edu>
data(lpsdata) procdata <- preprocess(lpsdata) lpsmclust <- exprmclust(procdata) lpsorder <- TSCANorder(lpsmclust,orderonly=FALSE,flip=TRUE) #Choose STAT1 gene expression to plot STAT2expr <- log2(lpsdata["STAT2",]+1) singlegeneplot(STAT2expr, lpsorder)