To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cghMCR")

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cghMCR

Find chromosome regions showing common gains/losses

Bioconductor version: 2.14

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("cghMCR")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cghMCR")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")

PDF	R Script	cghMCR findMCR
PDF		Reference Manual

biocViews	CopyNumberVariation, Microarray, Software
Version	1.22.0
In Bioconductor since	BioC 1.8 (R-2.3)
License	LGPL
Depends	methods, DNAcopy, CNTools, limma
Imports	BiocGenerics(>= 0.1.6), stats4
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