To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNTools")

In most cases, you don't need to download the package archive at all.

CNTools

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: 2.14

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("CNTools")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("CNTools")

 

PDF R Script NCTools HowTo
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.20.0
In Bioconductor since BioC 2.5 (R-2.10)
License LGPL
Depends R (>= 2.10), methods, tools, stats, genefilter
Imports
Suggests
System Requirements
URL
Depends On Me cghMCR
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CNTools_1.20.0.tar.gz
Windows Binary CNTools_1.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CNTools_1.20.0.tgz
Mac OS X 10.9 (Mavericks) CNTools_1.20.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center

Contact us: support.bioconductor.org

Hosting provided by Fred Hutchinson Cancer Research Center

Copyright © 2003 - 2014