Back to BiocCheck report for a small subset of BioC 3.19 packages

This page was generated on 2024-06-28 11:15:02 -0400 (Fri, 28 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4760
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 118/119HostnameOS / ArchBUILDBIOCCHECK
zellkonverter 1.15.1  (landing page)
Luke Zappia
Snapshot Date: 2024-06-28 10:00:01 -0400 (Fri, 28 Jun 2024)
git_url: https://git.bioconductor.org/packages/zellkonverter
git_branch: devel
git_last_commit: 328e7ea
git_last_commit_date: 2024-06-21 04:56:07 -0400 (Fri, 21 Jun 2024)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK  

BIOCCHECK results for zellkonverter on nebbiolo1


To the developers/maintainers of the zellkonverter package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: zellkonverter
Version: 1.15.1
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('zellkonverter_1.15.1.tar.gz')"
StartedAt: 2024-06-28 10:47:24 -0400 (Fri, 28 Jun 2024)
EndedAt: 2024-06-28 10:47:59 -0400 (Fri, 28 Jun 2024)
EllapsedTime: 34.7 seconds
RetCode: None
Status:   OK  
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('zellkonverter_1.15.1.tar.gz')"
###
##############################################################################
##############################################################################


─ BiocCheckVersion: 1.41.3
─ BiocVersion: 3.20
─ Package: zellkonverter
─ PackageVersion: 1.15.1
─ sourceDir: /tmp/RtmpeEynXn/file3bdb251f153a56/zellkonverter
─ installDir: /tmp/RtmpeEynXn/file3bdb251cdc5d10
─ BiocCheckDir: /home/biocbuild/bbs-3.19-bioc-testing/meat/zellkonverter.BiocCheck
─ platform: unix
─ isTarBall: TRUE

* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
    Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
    Bioconductor dependencies found in Imports & Depends (50%).
* Checking for pinned package versions in DESCRIPTION...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of zellkonverter...
* Checking coding practice...
    * NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
    * NOTE: The recommended function length is 50 lines or less. There
      are 10 functions greater than 50 lines.
* Checking man page documentation...
Registered S3 method overwritten by 'zellkonverter':
  method                                             from      
  py_to_r.pandas.core.arrays.categorical.Categorical reticulate
* Checking package NEWS...
    * NOTE: More than 1 NEWS file found. See ?news for recognition
      ordering.
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
  and vignette source...
    * NOTE: Consider shorter lines; 11 lines (0%) are > 80 characters
      long.
    * NOTE: Consider multiples of 4 spaces for line indents; 21 lines
      (1%) are not.
    See https://contributions.bioconductor.org/r-code.html
    See styler package: https://cran.r-project.org/package=styler as
      described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
    * NOTE: Cannot determine whether maintainer is subscribed to the
      Bioc-Devel mailing list (requires admin credentials). Subscribe
      here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
    Maintainer is registered at support site.
    Package is in the Support Site Watched Tags.

─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 6 NOTES

See the zellkonverter.BiocCheck folder and run
    browseVignettes(package = 'BiocCheck')
for details.