Back to BiocCheck report for a small subset of BioC 3.19 packages

This page was generated on 2024-07-15 11:15:01 -0400 (Mon, 15 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4742
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 107/119HostnameOS / ArchBUILDBIOCCHECK
sparseMatrixStats 1.17.2  (landing page)
Constantin Ahlmann-Eltze
Snapshot Date: 2024-07-15 10:00:01 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/sparseMatrixStats
git_branch: devel
git_last_commit: da46dd6
git_last_commit_date: 2024-06-12 07:08:31 -0400 (Wed, 12 Jun 2024)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    WARNINGS  

BIOCCHECK results for sparseMatrixStats on nebbiolo1


To the developers/maintainers of the sparseMatrixStats package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: sparseMatrixStats
Version: 1.17.2
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('sparseMatrixStats_1.17.2.tar.gz')"
StartedAt: 2024-07-15 10:42:39 -0400 (Mon, 15 Jul 2024)
EndedAt: 2024-07-15 10:43:22 -0400 (Mon, 15 Jul 2024)
EllapsedTime: 42.6 seconds
RetCode: None
Status:   WARNINGS  
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('sparseMatrixStats_1.17.2.tar.gz')"
###
##############################################################################
##############################################################################


* Installing package...
─ sourceDir: /tmp/RtmpyVKmtY/file2c2bb87737feca/sparseMatrixStats
─ BiocVersion: 3.20
─ Package: sparseMatrixStats
─ PackageVersion: 1.17.2
─ BiocCheckDir: /home/biocbuild/bbs-3.19-bioc-testing/meat/sparseMatrixStats.BiocCheck
─ BiocCheckVersion: 1.41.4
─ sourceDir: /tmp/RtmpyVKmtY/file2c2bb87737feca/sparseMatrixStats
─ installDir: /tmp/RtmpyVKmtY/file2c2bb850c6e052
─ isTarBall: TRUE
─ platform: unix

* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
    * WARNING: Package files exceed the 5MB size limit.
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
    Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
    Bioconductor dependencies found in Imports & Depends (20%).
* Checking for pinned package versions in DESCRIPTION...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of sparseMatrixStats...
* Checking coding practice...
    * NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
* Checking parsed R code in R directory, examples, vignettes...
    * NOTE: Avoid '<<-' if possible (found 1 times)
* Checking function lengths...
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
  and vignette source...
    * NOTE: Consider shorter lines; 181 lines (9%) are > 80 characters
      long.
    * NOTE: Consider multiples of 4 spaces for line indents; 657 lines
      (31%) are not.
    See https://contributions.bioconductor.org/r-code.html
    See styler package: https://cran.r-project.org/package=styler as
      described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
    * NOTE: Cannot determine whether maintainer is subscribed to the
      Bioc-Devel mailing list (requires admin credentials). Subscribe
      here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
    Maintainer is registered at support site.
    Package is in the Support Site Watched Tags.

─ BiocCheck results ──
0 ERRORS | 1 WARNINGS | 5 NOTES

See the sparseMatrixStats.BiocCheck folder and run
    browseVignettes(package = 'BiocCheck')
for details.