| Back to BiocCheck report for a small subset of BioC 3.19 packages |
This page was generated on 2024-07-15 11:15:01 -0400 (Mon, 15 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4742 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 72/119 | Hostname | OS / Arch | BUILD | BIOCCHECK | |||||||
| MatrixGenerics 1.17.0 (landing page) Peter Hickey
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | ERROR | |||||||
|
To the developers/maintainers of the MatrixGenerics package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MatrixGenerics |
| Version: 1.17.0 |
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('MatrixGenerics_1.17.0.tar.gz')" |
| StartedAt: 2024-07-15 10:41:32 -0400 (Mon, 15 Jul 2024) |
| EndedAt: 2024-07-15 10:41:46 -0400 (Mon, 15 Jul 2024) |
| EllapsedTime: 13.6 seconds |
| RetCode: None |
| Status: ERROR |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.19-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('MatrixGenerics_1.17.0.tar.gz')"
###
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* Installing package...
─ sourceDir: /tmp/Rtmp6hco77/file2b95fa798d650e/MatrixGenerics
─ BiocVersion: 3.20
─ Package: MatrixGenerics
─ PackageVersion: 1.17.0
─ BiocCheckDir: /home/biocbuild/bbs-3.19-bioc-testing/meat/MatrixGenerics.BiocCheck
─ BiocCheckVersion: 1.41.4
─ sourceDir: /tmp/Rtmp6hco77/file2b95fa798d650e/MatrixGenerics
─ installDir: /tmp/Rtmp6hco77/file2b95fa21bacd5c
─ isTarBall: TRUE
─ platform: unix
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
No vignettes found.
* NOTE: Consider adding these automatically suggested biocViews:
DataImport
Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
* NOTE: No Bioconductor dependencies detected. Note that some
infrastructure packages may not have Bioconductor dependencies.
For more information, reach out to the Bioconductor community
and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* ERROR: No 'vignettes' directory.
* Checking package installation calls in R code...
* Checking for library/require of MatrixGenerics...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 2
times)
* Checking function lengths...
* Checking man page documentation...
* WARNING: Empty or missing \value sections found in man page(s).
* NOTE: Consider adding runnable examples to man pages that
document exported objects.
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 302 lines (9%) are > 80 characters
long.
* NOTE: Consider multiples of 4 spaces for line indents; 171 lines
(5%) are not.
See https://contributions.bioconductor.org/r-code.html
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
* NOTE: Cannot determine whether maintainer is subscribed to the
Bioc-Devel mailing list (requires admin credentials). Subscribe
here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
Maintainer is registered at support site.
* ERROR: Add package to Watched Tags in your Support Site profile;
visit https://support.bioconductor.org/accounts/edit/profile
─ BiocCheck results ──
2 ERRORS | 1 WARNINGS | 7 NOTES
See the MatrixGenerics.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.