Back to Long Tests report for BioC 3.19

This page was generated on 2024-06-22 23:55 -0400 (Sat, 22 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4758
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4492
merida1macOS 12.7.4 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4506
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 11/33HostnameOS / ArchCHECK
biodbNcbi 1.8.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-06-22 09:55 -0400 (Sat, 22 Jun 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_19
git_last_commit: 1365c98
git_last_commit_date: 2024-04-30 11:41:09 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
palomino3Windows Server 2022 Datacenter / x64  WARNINGS  
merida1macOS 12.7.4 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on palomino3

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.8.0
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.8.0.tar.gz
StartedAt: 2024-06-22 16:18:03 -0400 (Sat, 22 Jun 2024)
EndedAt: 2024-06-22 16:25:05 -0400 (Sat, 22 Jun 2024)
EllapsedTime: 421.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-06-22 16:23:28.153][biodb::testContext]
biodb.INFO [2024-06-22 16:23:28.165][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-22 16:23:28.167][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-06-22 16:23:28.168][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-22 16:23:28.169][biodb::testContext]
biodb.INFO [2024-06-22 16:23:28.177][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-22 16:23:28.181][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-22 16:23:28.190][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:23:28.192][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-22 16:23:28.193][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-22 16:23:28.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.198][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-22 16:23:28.215][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-22 16:23:28.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.220][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-22 16:23:28.222][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-22 16:23:28.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.226][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-22 16:23:28.228][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-22 16:23:28.229][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-22 16:23:28.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.234][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-22 16:23:28.235][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-22 16:23:28.236][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-22 16:23:28.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.241][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-22 16:23:28.242][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-22 16:23:28.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.247][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-22 16:23:28.248][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-22 16:23:28.249][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-22 16:23:28.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.254][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-22 16:23:28.255][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-22 16:23:28.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.261][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-22 16:23:28.262][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-22 16:23:28.266][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-22 16:23:28.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.271][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-22 16:23:28.272][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-22 16:23:28.273][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-22 16:23:28.275][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-22 16:23:28.276][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-22 16:23:28.277][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-22 16:23:28.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.282][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-22 16:23:28.283][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-22 16:23:28.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.287][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-22 16:23:28.289][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-22 16:23:28.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.293][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-22 16:23:28.295][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-22 16:23:28.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.299][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-22 16:23:28.301][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-22 16:23:28.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.305][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-22 16:23:28.306][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-22 16:23:28.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.311][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-22 16:23:28.312][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-22 16:23:28.316][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-22 16:23:28.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.321][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-22 16:23:28.322][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-22 16:23:28.323][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-22 16:23:28.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.330][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-22 16:23:28.369][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.383][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-22 16:23:28.385][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.386][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:28.387][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.389][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.390][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.391][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.393][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-22 16:23:28.394][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:28.395][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.396][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-22 16:23:28.398][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:28.399][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.400][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.401][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:23:28.401][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:23:28.401][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:23:28.401][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-22 16:23:28.401][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-22 16:23:28.404][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:23:28.405][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:28.406][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:28.407][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:28.408][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:28.409][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:28.411][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.412][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.414][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:28.415][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:28.417][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.418][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.420][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-22 16:23:28.422][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.423][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-22 16:23:28.425][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.426][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:28.427][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.428][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.429][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.430][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.432][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-22 16:23:28.434][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:28.435][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.436][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-22 16:23:28.437][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:28.438][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.439][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.441][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:23:28.441][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:23:28.441][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:23:28.441][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-22 16:23:28.441][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-22 16:23:28.442][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:23:28.443][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:28.444][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:28.445][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:28.447][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:28.448][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:28.449][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.450][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.451][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:28.452][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:28.453][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.455][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.456][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-22 16:23:28.458][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.459][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-22 16:23:28.460][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.461][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:28.463][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.464][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.465][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.466][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.468][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-22 16:23:28.469][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:28.470][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.471][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-22 16:23:28.473][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:28.474][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.475][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.476][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.477][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:23:28.478][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:28.479][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:28.481][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:28.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:28.483][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:28.484][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.485][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.487][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:28.488][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:28.489][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.490][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.491][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-22 16:23:28.493][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.495][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-22 16:23:28.496][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.498][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:28.499][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.500][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.501][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.502][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.504][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-22 16:23:28.505][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:28.506][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.507][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-22 16:23:28.508][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:28.510][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.511][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.512][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.513][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:23:28.514][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:28.516][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:28.517][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:28.518][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:28.519][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:28.520][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.521][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.522][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:28.523][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:28.525][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.526][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.529][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:23:28.530][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.631][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-22 16:23:28.634][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-22 16:23:28.636][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-22 16:23:28.638][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-22 16:23:28.639][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-22 16:23:28.641][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-22 16:23:28.642][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-22 16:23:28.644][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-22 16:23:28.646][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-22 16:23:28.647][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-22 16:23:28.649][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-22 16:23:28.650][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-22 16:23:28.652][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-22 16:23:28.654][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-22 16:23:28.655][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-22 16:23:28.657][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-22 16:23:28.658][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-22 16:23:28.660][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-22 16:23:28.661][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-22 16:23:28.663][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-22 16:23:28.664][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-22 16:23:28.666][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-22 16:23:28.668][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-22 16:23:28.669][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-22 16:23:28.671][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-22 16:23:28.672][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-22 16:23:28.674][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-22 16:23:28.675][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-22 16:23:28.677][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-22 16:23:28.679][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-22 16:23:28.680][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-22 16:23:28.682][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-22 16:23:28.684][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-22 16:23:28.685][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-22 16:23:28.687][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-22 16:23:28.689][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-22 16:23:28.690][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-22 16:23:28.692][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-22 16:23:28.693][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-22 16:23:28.695][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-22 16:23:28.696][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-22 16:23:28.698][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-22 16:23:28.700][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-22 16:23:28.701][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-22 16:23:28.703][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-22 16:23:28.704][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-22 16:23:28.706][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-22 16:23:28.708][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-22 16:23:28.709][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-22 16:23:28.711][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-22 16:23:28.712][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-22 16:23:28.714][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-22 16:23:28.715][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-22 16:23:28.717][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-22 16:23:28.719][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-22 16:23:28.720][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-22 16:23:28.722][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-22 16:23:28.723][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-22 16:23:28.725][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-22 16:23:28.727][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-22 16:23:28.728][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-22 16:23:28.730][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-22 16:23:28.731][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-22 16:23:28.733][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-22 16:23:28.735][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-22 16:23:28.736][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-22 16:23:28.738][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-22 16:23:28.739][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-22 16:23:28.741][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-22 16:23:28.742][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-22 16:23:28.744][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-22 16:23:28.746][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-22 16:23:28.747][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-22 16:23:28.749][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-22 16:23:28.750][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-22 16:23:28.752][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-22 16:23:28.753][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-22 16:23:28.755][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-22 16:23:28.757][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-22 16:23:28.758][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-22 16:23:28.760][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-22 16:23:28.762][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-22 16:23:28.768][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-22 16:23:28.804][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-22 16:23:28.808][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-22 16:23:28.811][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:23:28.813][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.816][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:28.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:28.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:28.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:28.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:28.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:28.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:28.961][bdb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-22 16:23:28.971][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-22 16:23:28.973][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.974][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-22 16:23:28.976][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.977][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:28.978][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.979][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.981][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.982][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:28.983][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-22 16:23:28.984][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:28.986][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:28.988][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-22 16:23:28.989][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:28.991][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-22 16:23:28.991][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-22 16:23:28.992][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:28.994][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:28.995][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-22 16:23:28.996][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:28.997][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:28.998][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:29.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:29.001][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:29.002][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:29.003][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:23:29.003][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-22 16:23:29.005][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:29.006][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:29.007][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.008][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:29.010][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-22 16:23:29.012][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.013][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-22 16:23:29.014][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.041][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:29.043][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.044][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:29.045][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.047][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:29.048][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:23:29.049][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:29.050][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.051][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-22 16:23:29.053][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:29.054][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-22 16:23:29.054][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-22 16:23:29.054][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-22 16:23:29.054][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-22 16:23:29.054][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-22 16:23:29.054][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-22 16:23:29.057][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:29.058][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:23:29.059][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-22 16:23:29.061][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:29.063][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:29.065][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:29.066][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:29.067][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:29.068][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:29.069][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:23:29.069][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:23:29.071][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:29.072][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:29.073][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.074][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:29.076][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-22 16:23:29.078][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:29.079][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-22 16:23:29.080][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.082][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:29.083][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.084][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:29.085][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.087][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:29.088][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:23:29.089][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:29.090][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.091][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-22 16:23:29.093][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.094][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:29.095][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:29.096][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:23:29.096][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:23:29.096][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:23:29.098][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-22 16:23:29.099][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:29.100][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:29.101][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:29.102][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:29.103][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:29.104][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:29.106][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:23:29.106][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:23:29.106][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-22 16:23:29.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:29.108][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:29.109][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.110][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-22 16:23:29.112][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-22 16:23:29.114][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.115][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-22 16:23:29.116][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.118][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:29.119][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.120][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:29.121][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.122][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:29.124][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:23:29.125][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:29.126][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.128][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-22 16:23:29.129][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:29.130][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-22 16:23:29.130][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-22 16:23:29.131][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:29.133][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:29.134][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-22 16:23:29.135][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:29.136][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:29.137][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:29.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:29.139][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:29.141][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:29.142][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:23:29.142][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:23:29.142][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-22 16:23:29.143][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:29.144][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:29.145][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:29.147][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-22 16:23:29.152][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-22 16:23:29.154][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-22 16:23:29.156][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-22 16:23:29.158][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-22 16:23:29.159][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-22 16:23:29.161][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-22 16:23:29.184][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-06-22 16:23:29.185][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-06-22 16:23:29.189][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-06-22 16:23:29.193][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-06-22 16:23:29.197][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:29.198][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:29.200][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-06-22 16:23:29.202][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:29.203][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:29.204][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-06-22 16:23:29.215][biodb::testThat]
biodb.INFO [2024-06-22 16:23:29.217][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-22 16:23:29.218][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:23:29.219][biodb::testThat]
biodb.TRACE[2024-06-22 16:23:29.227][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-06-22 16:23:29.229][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:29.233][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-22 16:23:29.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:29.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:29.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:29.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:29.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:29.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:29.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:29.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.309][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:29.321][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.347][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:29.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:29.444][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-06-22 16:23:29.447][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.452][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.478][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:29.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:29.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.483][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:29.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:29.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:29.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:29.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:29.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:29.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.881][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.906][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.915][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:29.917][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.920][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:29.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.935][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.936][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:29.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.939][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.946][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:29.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:29.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:29.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:29.970][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-06-22 16:23:30.000][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:30.002][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-22 16:23:30.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:30.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:30.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:30.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:30.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:30.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:30.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:30.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.051][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:30.053][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.057][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:30.111][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-06-22 16:23:30.129][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.134][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.139][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:30.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:30.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.144][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:30.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.149][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:30.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:30.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:30.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:30.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.267][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:30.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.302][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:30.304][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.306][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.322][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.324][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:30.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.326][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:30.333][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:30.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:30.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:30.337][ef$get] fields variable is a list.
biodb.INFO [2024-06-22 16:23:30.350][biodb::testThat]
biodb.INFO [2024-06-22 16:23:30.351][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-22 16:23:30.352][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:23:30.358][biodb::testThat]
biodb.DEBUG[2024-06-22 16:23:30.361][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-06-22 16:23:30.367][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-22 16:23:30.377][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2024-06-22 16:23:30.378][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2024-06-22 16:23:30.380][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-22 16:23:30.382][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:23:30.383][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:23:30.384][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:23:30.386][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:23:30.387][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-22 16:23:30.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:30.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:30.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:30.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:30.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:30.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:30.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:30.408][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-06-22 16:23:30.426][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:23:30.427][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:23:30.429][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2024-06-22 16:23:32.153][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2024-06-22 16:23:33.487][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:23:33.489][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2024-06-22 16:23:33.505][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2024-06-22 16:23:33.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:33.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:33.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:33.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:33.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:33.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:33.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:33.540][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2024-06-22 16:23:33.562][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:23:33.563][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:23:33.577][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2024-06-22 16:23:34.710][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2024-06-22 16:23:36.007][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:23:36.011][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2024-06-22 16:23:36.017][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2024-06-22 16:23:36.022][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2024-06-22 16:23:36.027][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:23:36.028][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-06-22 16:23:36.030][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-06-22 16:23:36.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:36.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:36.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:36.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:36.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:36.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:36.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.074][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:36.075][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.079][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:36.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:36.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:36.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:36.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:36.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:36.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:36.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:36.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.158][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:36.159][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.164][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:36.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:36.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:36.233][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-06-22 16:23:36.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:23:36.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:23:36.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:23:36.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:23:36.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:23:36.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:23:36.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:23:36.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:23:36.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:23:36.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:23:36.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:23:36.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:23:36.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:23:36.289][biodb::testThat]
biodb.INFO [2024-06-22 16:23:36.291][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-22 16:23:36.292][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:23:36.293][biodb::testThat]
biodb.INFO [2024-06-22 16:23:36.302][biodb::testThat]
biodb.INFO [2024-06-22 16:23:36.303][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-22 16:23:36.305][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:23:36.306][biodb::testThat]
biodb.WARN [2024-06-22 16:23:36.324][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-06-22 16:23:36.342][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-06-22 16:23:36.354][biodb::testThat]
biodb.INFO [2024-06-22 16:23:36.356][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-22 16:23:36.357][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:23:36.358][biodb::testThat]
biodb.TRACE[2024-06-22 16:23:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.394][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.399][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:36.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.433][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:36.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.438][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:36.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:36.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:36.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:36.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:23:36.466][biodb::testThat]
biodb.INFO [2024-06-22 16:23:36.467][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-22 16:23:36.469][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:23:36.470][biodb::testThat]
biodb.INFO [2024-06-22 16:23:36.483][biodb::testThat]
biodb.INFO [2024-06-22 16:23:36.484][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-22 16:23:36.486][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:23:36.487][biodb::testThat]
biodb.INFO [2024-06-22 16:23:36.498][biodb::testThat]
biodb.INFO [2024-06-22 16:23:36.499][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-22 16:23:36.501][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:23:36.502][biodb::testThat]
biodb.DEBUG[2024-06-22 16:23:36.507][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-06-22 16:23:37.848][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-06-22 16:23:39.221][biodb::testThat]
biodb.INFO [2024-06-22 16:23:39.223][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-22 16:23:39.224][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:23:39.226][biodb::testThat]
biodb.INFO [2024-06-22 16:23:39.241][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-22 16:23:39.243][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-06-22 16:23:39.245][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-06-22 16:23:39.246][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-22 16:23:39.247][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.249][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.251][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-22 16:23:39.264][biodb::testContext]
biodb.INFO [2024-06-22 16:23:39.265][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-22 16:23:39.266][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-06-22 16:23:39.268][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-22 16:23:39.269][biodb::testContext]
biodb.INFO [2024-06-22 16:23:39.273][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-22 16:23:39.276][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-22 16:23:39.281][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:23:39.283][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-22 16:23:39.284][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-22 16:23:39.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.289][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-22 16:23:39.290][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-22 16:23:39.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.295][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-22 16:23:39.296][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-22 16:23:39.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.301][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-22 16:23:39.302][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-22 16:23:39.303][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-22 16:23:39.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.308][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-22 16:23:39.324][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-22 16:23:39.326][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-22 16:23:39.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.331][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-22 16:23:39.332][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-22 16:23:39.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.339][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-22 16:23:39.340][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-22 16:23:39.341][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-22 16:23:39.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.346][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-22 16:23:39.347][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-22 16:23:39.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.352][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-22 16:23:39.353][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-22 16:23:39.354][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-22 16:23:39.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.359][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-22 16:23:39.360][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-22 16:23:39.361][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-22 16:23:39.363][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-22 16:23:39.364][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-22 16:23:39.365][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-22 16:23:39.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.370][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-22 16:23:39.371][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-22 16:23:39.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.376][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-22 16:23:39.377][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-22 16:23:39.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.381][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-22 16:23:39.383][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-22 16:23:39.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.392][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-22 16:23:39.394][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-22 16:23:39.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.399][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-22 16:23:39.400][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-22 16:23:39.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.404][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-22 16:23:39.406][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-22 16:23:39.410][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-22 16:23:39.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.415][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-22 16:23:39.416][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-22 16:23:39.417][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-22 16:23:39.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.422][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-22 16:23:39.424][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.425][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-22 16:23:39.426][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.428][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:39.429][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.430][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.431][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.433][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.434][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-22 16:23:39.435][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:39.436][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.437][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-22 16:23:39.439][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:39.440][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.441][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.442][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:23:39.442][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:23:39.442][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:23:39.442][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-22 16:23:39.442][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-22 16:23:39.444][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:23:39.445][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:39.446][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:39.447][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:39.448][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:39.450][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:39.451][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.452][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.453][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:39.454][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:39.455][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.457][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.458][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-22 16:23:39.460][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.462][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-22 16:23:39.463][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.464][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:39.465][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.466][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.468][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.469][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.470][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-22 16:23:39.471][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:39.473][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.474][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-22 16:23:39.475][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:39.476][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.477][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.479][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:23:39.479][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:23:39.479][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:23:39.479][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-22 16:23:39.479][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-22 16:23:39.480][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:23:39.481][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:39.482][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:39.483][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:39.485][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:39.486][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:39.487][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.488][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.489][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:39.490][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:39.491][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.493][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.494][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-22 16:23:39.496][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.497][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-22 16:23:39.498][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.500][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:39.501][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.502][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.503][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.505][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.506][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-22 16:23:39.507][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:39.509][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.510][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-22 16:23:39.512][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:39.513][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.514][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.515][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.517][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:23:39.518][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:39.519][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:39.525][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:39.527][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:39.528][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:39.529][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.530][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.532][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:39.533][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:39.534][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.535][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.536][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-22 16:23:39.538][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.539][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-22 16:23:39.541][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.542][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:39.543][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.544][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.546][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.547][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.548][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-22 16:23:39.549][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:39.550][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.552][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-22 16:23:39.553][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:39.554][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.555][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.557][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.558][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:23:39.560][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:39.561][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:39.562][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:39.563][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:39.564][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:39.565][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.567][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.568][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:39.569][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:39.570][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:39.571][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:39.573][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:23:39.574][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.677][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-22 16:23:39.678][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-22 16:23:39.680][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-22 16:23:39.681][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-22 16:23:39.683][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-22 16:23:39.685][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-22 16:23:39.686][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-22 16:23:39.688][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-22 16:23:39.690][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-22 16:23:39.691][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-22 16:23:39.693][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-22 16:23:39.694][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-22 16:23:39.696][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-22 16:23:39.697][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-22 16:23:39.699][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-22 16:23:39.701][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-22 16:23:39.702][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-22 16:23:39.704][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-22 16:23:39.705][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-22 16:23:39.707][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-22 16:23:39.709][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-22 16:23:39.710][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-22 16:23:39.712][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-22 16:23:39.713][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-22 16:23:39.715][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-22 16:23:39.717][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-22 16:23:39.718][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-22 16:23:39.720][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-22 16:23:39.721][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-22 16:23:39.723][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-22 16:23:39.724][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-22 16:23:39.726][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-22 16:23:39.728][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-22 16:23:39.729][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-22 16:23:39.731][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-22 16:23:39.732][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-22 16:23:39.734][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-22 16:23:39.735][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-22 16:23:39.737][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-22 16:23:39.739][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-22 16:23:39.740][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-22 16:23:39.742][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-22 16:23:39.744][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-22 16:23:39.745][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-22 16:23:39.747][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-22 16:23:39.749][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-22 16:23:39.750][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-22 16:23:39.752][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-22 16:23:39.753][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-22 16:23:39.755][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-22 16:23:39.757][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-22 16:23:39.758][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-22 16:23:39.760][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-22 16:23:39.761][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-22 16:23:39.763][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-22 16:23:39.765][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-22 16:23:39.766][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-22 16:23:39.773][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-22 16:23:39.775][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-22 16:23:39.776][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-22 16:23:39.778][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-22 16:23:39.780][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-22 16:23:39.781][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-22 16:23:39.783][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-22 16:23:39.784][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-22 16:23:39.786][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-22 16:23:39.788][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-22 16:23:39.789][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-22 16:23:39.791][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-22 16:23:39.792][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-22 16:23:39.794][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-22 16:23:39.795][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-22 16:23:39.797][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-22 16:23:39.799][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-22 16:23:39.800][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-22 16:23:39.802][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-22 16:23:39.804][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-22 16:23:39.805][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-22 16:23:39.807][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-22 16:23:39.808][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-22 16:23:39.810][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-22 16:23:39.812][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-22 16:23:39.814][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-22 16:23:39.817][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-22 16:23:39.821][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-22 16:23:39.823][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:23:39.824][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.827][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:23:39.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:39.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:39.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:39.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:39.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:39.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:39.976][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-22 16:23:39.979][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-22 16:23:39.981][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.982][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-22 16:23:39.984][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.985][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:39.986][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.988][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.989][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.990][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:39.991][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-22 16:23:39.993][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:39.994][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:39.995][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-22 16:23:39.996][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:39.997][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-22 16:23:39.997][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-22 16:23:39.999][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:40.000][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:40.001][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-22 16:23:40.003][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:40.004][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:40.005][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:40.006][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:40.007][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:40.008][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:40.010][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:23:40.010][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-22 16:23:40.011][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:40.012][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:40.013][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.014][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:40.016][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-22 16:23:40.018][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.019][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-22 16:23:40.021][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.022][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:40.023][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.024][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:40.026][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.027][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:40.028][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:23:40.029][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:40.031][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.032][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-22 16:23:40.033][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:40.039][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-22 16:23:40.039][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-22 16:23:40.039][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-22 16:23:40.039][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-22 16:23:40.039][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-22 16:23:40.039][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-22 16:23:40.041][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:40.042][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:23:40.044][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-22 16:23:40.045][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:40.046][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:40.047][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:40.048][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:40.049][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:40.051][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:40.052][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:23:40.052][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:23:40.055][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:40.056][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:40.057][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.058][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:40.060][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-22 16:23:40.062][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:40.064][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-22 16:23:40.065][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.066][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:40.067][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.069][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:40.070][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.071][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:40.072][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:23:40.073][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:40.075][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.076][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-22 16:23:40.077][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.079][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:23:40.080][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:40.081][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:23:40.081][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:23:40.081][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:23:40.083][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-22 16:23:40.084][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:40.085][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:40.086][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:40.087][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:40.089][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:40.090][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:40.091][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:23:40.091][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:23:40.091][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-22 16:23:40.092][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:40.093][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:40.095][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.096][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-22 16:23:40.097][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-22 16:23:40.099][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.101][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-22 16:23:40.102][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.103][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:23:40.104][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.106][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:23:40.107][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.108][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:23:40.109][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:23:40.111][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:23:40.112][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.113][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-22 16:23:40.115][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:23:40.116][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-22 16:23:40.116][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-22 16:23:40.117][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:23:40.118][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:23:40.119][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-22 16:23:40.121][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:40.122][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:40.123][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:23:40.124][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:23:40.125][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:23:40.127][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:23:40.128][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:23:40.128][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:23:40.128][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-22 16:23:40.129][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:23:40.130][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:23:40.131][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:23:40.133][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-22 16:23:40.134][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-22 16:23:40.136][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-22 16:23:40.138][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-22 16:23:40.140][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-22 16:23:40.141][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-22 16:23:40.143][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-22 16:23:40.151][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-06-22 16:23:40.152][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-06-22 16:23:40.153][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-06-22 16:23:40.156][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-06-22 16:23:40.157][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:40.159][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:40.161][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-06-22 16:23:40.162][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:40.169][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:40.273][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-06-22 16:23:40.280][biodb::testThat]
biodb.INFO [2024-06-22 16:23:40.282][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-22 16:23:40.283][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:23:40.284][biodb::testThat]
biodb.TRACE[2024-06-22 16:23:40.299][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-06-22 16:23:40.301][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:40.305][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-22 16:23:40.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:40.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:40.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:40.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:40.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:40.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:40.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:40.335][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:40.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:40.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.347][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.354][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:40.356][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:40.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.361][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:40.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:40.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.366][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:40.367][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:40.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:40.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.378][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:40.379][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:40.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.384][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.389][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:40.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:40.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.395][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:40.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:40.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.402][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:40.403][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:40.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.409][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:40.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:40.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:40.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:40.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:40.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:40.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:40.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:40.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:40.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:40.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:40.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:40.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:40.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:40.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:40.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:40.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:40.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:40.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:40.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:40.511][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-06-22 16:23:40.514][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:40.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:40.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.519][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:40.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:40.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:40.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:40.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:40.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:40.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:40.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:40.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:40.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:40.543][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-22 16:23:40.571][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-06-22 16:23:40.572][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-06-22 16:23:40.574][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-06-22 16:23:40.743][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-22 16:23:40.744][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:40.746][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-22 16:23:40.757][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:40.758][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:40.760][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-22 16:23:40.761][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:40.762][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-22 16:23:40.764][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:40.765][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-22 16:23:40.777][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-06-22 16:23:40.779][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-06-22 16:23:40.781][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:23:40.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-06-22 16:23:40.787][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-22 16:23:40.788][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:23:40.790][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:23:40.791][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:23:40.792][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:23:40.793][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-22 16:23:40.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:40.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:40.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:40.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:40.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:40.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:40.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:40.812][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2024-06-22 16:23:40.815][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:23:40.816][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:23:40.819][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2024-06-22 16:23:42.131][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2024-06-22 16:23:43.398][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:23:43.400][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2024-06-22 16:23:43.406][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2024-06-22 16:23:43.410][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2024-06-22 16:23:43.414][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:23:43.416][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:43.417][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-22 16:23:43.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:43.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:43.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:43.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:43.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:43.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:43.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:43.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.454][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:43.455][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.460][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:43.522][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-06-22 16:23:43.523][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.529][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.534][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.540][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:43.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:43.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.546][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:43.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.551][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:43.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:43.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.557][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:43.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:43.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:43.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:43.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:43.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:43.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:43.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:43.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:43.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:43.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.671][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.672][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:43.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:43.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.700][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:43.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:43.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.705][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:43.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.711][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:43.713][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:43.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.717][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:43.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:43.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.734][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:43.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:43.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.740][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:43.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:43.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.746][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:43.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.752][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:43.753][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:43.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.757][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:43.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:43.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:43.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.786][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:43.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:43.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.792][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:43.793][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:43.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.797][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:43.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:43.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.848][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.850][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.868][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:43.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:43.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.874][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:43.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:43.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:43.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:43.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.883][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:43.885][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:43.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.887][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.888][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:43.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:43.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.903][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:43.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:43.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:43.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:43.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:43.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.918][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:43.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:43.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.922][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.923][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:43.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:43.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.943][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.948][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.953][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:43.954][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.973][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.974][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:43.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.984][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:43.985][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:43.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:43.995][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:43.997][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:43.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:43.999][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.006][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:44.008][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:44.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.017][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:44.019][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:44.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.028][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:44.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:44.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.039][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:44.040][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:44.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.050][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:44.052][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:44.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.072][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-06-22 16:23:44.074][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:44.076][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-22 16:23:44.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:44.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:44.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:44.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:44.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:44.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:44.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:44.104][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:44.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:44.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:44.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.116][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:44.117][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:44.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.122][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:44.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:44.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.127][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:44.129][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:44.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.133][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:44.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.138][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:44.140][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:44.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:44.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:44.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.149][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:44.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:44.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.153][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.156][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:44.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.161][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:44.162][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:44.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:44.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:44.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:44.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:44.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:44.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:44.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:44.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:44.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:44.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:44.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:44.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:44.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:44.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:44.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:44.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:44.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:44.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:44.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:44.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:44.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:44.231][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-06-22 16:23:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:44.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.239][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:44.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:44.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:44.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:44.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:44.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:44.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:44.259][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-22 16:23:44.260][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-06-22 16:23:44.305][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:23:44.319][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-06-22 16:23:44.321][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-22 16:23:44.322][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:23:44.324][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:23:44.325][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:23:44.326][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:23:44.328][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-22 16:23:44.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:44.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:44.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:44.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:44.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:44.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:44.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:44.355][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-06-22 16:23:44.358][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:23:44.360][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:23:44.361][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-06-22 16:23:45.471][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-06-22 16:23:46.534][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:23:46.537][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-06-22 16:23:46.543][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-06-22 16:23:46.547][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-06-22 16:23:46.551][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:23:46.553][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:46.554][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-22 16:23:46.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:46.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:46.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:46.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:46.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:46.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:46.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:46.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.590][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:46.591][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:46.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.595][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:46.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:46.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:46.650][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-06-22 16:23:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:46.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.664][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:46.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:46.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:46.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:46.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.679][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:46.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:46.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:46.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:46.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:46.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:46.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:46.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:46.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:46.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.792][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.812][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:46.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:46.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.817][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:46.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:46.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.822][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:46.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.827][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:46.828][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:46.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.834][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:46.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.855][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:46.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:46.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:46.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:46.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.865][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:46.866][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:46.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.868][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:46.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:46.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.895][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.900][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:46.901][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:46.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.905][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:46.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:46.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.941][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.943][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.945][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:46.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:46.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:46.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:46.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:46.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:46.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.975][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:46.976][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:46.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.994][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:46.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:46.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:46.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:47.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.008][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:47.010][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.013][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:47.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.027][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.032][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.037][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.042][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:47.043][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.046][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:47.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.061][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.063][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.072][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.074][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.083][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.094][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:47.095][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:47.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.104][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.106][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.108][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.115][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:47.117][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.119][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.126][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.128][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.130][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.137][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.138][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.165][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-06-22 16:23:47.167][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:47.169][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-22 16:23:47.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:47.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:47.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:47.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:47.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:47.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:47.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:47.207][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.211][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.219][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:47.220][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:47.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.226][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:47.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:47.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.231][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:47.232][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.238][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:47.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.243][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:47.244][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.246][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.250][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.254][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:47.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.258][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.261][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:47.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.266][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.268][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.276][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:47.339][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-06-22 16:23:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.346][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:47.366][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-22 16:23:47.367][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-06-22 16:23:47.369][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:23:47.370][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-06-22 16:23:47.372][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:23:47.377][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-06-22 16:23:47.378][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:23:47.380][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:47.381][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-22 16:23:47.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:47.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:47.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:47.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:47.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:47.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:47.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.413][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:47.414][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.418][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:47.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:47.478][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-06-22 16:23:47.479][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.484][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.489][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:47.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:47.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:47.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.504][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:47.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.509][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:47.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:47.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.614][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.634][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.649][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:47.651][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.654][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:47.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.680][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.685][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:47.686][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.690][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.725][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.726][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.765][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.766][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.785][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:47.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:47.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.790][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:47.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:47.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.794][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:47.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:47.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.799][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:47.801][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:47.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.804][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:47.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:47.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:47.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.835][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:47.837][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.841][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.842][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.859][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:47.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.864][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.869][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.874][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:47.875][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.893][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.895][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:47.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.897][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.904][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.906][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:47.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.915][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:47.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:47.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.926][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:47.928][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:47.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.937][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.939][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:47.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.941][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.953][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:47.955][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:47.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.964][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.966][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:47.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.975][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.977][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:47.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:47.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:47.998][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-06-22 16:23:48.000][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:48.002][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-22 16:23:48.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:48.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:48.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:48.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:48.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:48.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:48.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:48.032][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:48.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:48.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:48.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.044][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:48.045][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:48.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:48.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.055][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:48.057][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:48.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.059][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:48.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:48.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.067][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:48.068][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:48.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.073][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:48.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.078][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:48.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:48.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.081][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:48.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.089][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:48.090][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:48.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.092][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.096][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:48.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:48.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:48.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:48.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:48.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:48.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:48.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:48.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:48.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:48.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:48.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:48.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:48.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:48.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:48.158][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-06-22 16:23:48.161][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:48.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:48.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:48.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:48.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:48.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:48.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:48.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:48.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:48.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:48.185][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-22 16:23:48.187][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-06-22 16:23:48.188][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:23:48.190][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-06-22 16:23:48.191][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-22 16:23:48.193][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:23:48.194][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:23:48.196][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:23:48.197][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:23:48.198][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-22 16:23:48.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:48.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:48.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:48.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:48.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:48.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:48.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:48.216][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-06-22 16:23:48.219][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:23:48.220][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:23:48.221][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-06-22 16:23:49.612][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-06-22 16:23:51.024][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:23:51.027][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-06-22 16:23:51.034][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-06-22 16:23:51.038][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-06-22 16:23:51.042][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:23:51.043][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:51.045][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-22 16:23:51.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:51.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:51.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:51.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:51.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:51.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:51.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:51.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.081][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:51.082][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.086][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:51.140][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-06-22 16:23:51.142][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.147][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.152][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:51.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:51.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.161][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:51.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:51.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.166][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:51.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.173][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:51.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.280][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.300][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:51.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.314][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:51.316][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:51.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.334][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.349][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:51.350][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.374][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.383][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.385][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.387][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.388][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.418][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.420][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:51.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:51.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.448][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:51.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:51.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.453][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:51.454][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:51.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.456][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:51.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:51.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:51.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.488][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:51.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:51.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:51.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:51.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:51.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.512][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.517][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.522][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:51.523][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.526][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.542][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.543][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.553][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.554][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.563][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.574][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:51.576][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:51.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.585][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.586][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.589][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.596][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:51.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:51.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.600][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.607][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.608][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.611][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.618][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.619][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.659][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-06-22 16:23:51.661][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:51.663][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-22 16:23:51.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:51.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:51.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:51.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:51.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:51.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:51.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:51.713][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.727][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:51.728][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:51.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.731][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:51.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.740][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:51.741][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.748][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:51.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:51.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.753][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:51.755][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:51.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:51.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.766][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:51.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:51.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:51.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:51.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.779][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.781][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.792][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:51.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:51.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:51.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:51.870][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-06-22 16:23:51.873][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:51.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:51.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:51.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:51.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:51.897][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-22 16:23:51.898][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-06-22 16:23:51.900][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:23:51.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-06-22 16:23:51.903][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-22 16:23:51.905][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:23:51.906][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:23:51.907][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:23:51.908][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:23:51.909][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-22 16:23:51.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:51.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:51.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:51.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:51.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:51.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:51.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:51.927][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-06-22 16:23:51.930][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:23:51.931][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:23:51.933][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-06-22 16:23:53.029][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-06-22 16:23:54.343][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:23:54.346][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-06-22 16:23:54.353][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-06-22 16:23:54.357][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-06-22 16:23:54.361][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:23:54.363][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:54.364][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-22 16:23:54.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:54.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:54.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:54.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:54.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:54.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:54.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:54.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.405][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:54.406][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.409][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:54.464][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-06-22 16:23:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.475][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:54.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:54.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.485][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:54.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:54.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:54.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.495][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:54.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:54.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:54.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:54.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:54.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:54.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:54.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:54.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.595][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.599][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.615][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:54.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:54.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:54.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:54.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.625][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:54.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:54.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.630][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:54.631][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:54.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.634][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:54.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.660][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:54.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.665][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:54.666][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:54.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.684][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.700][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.701][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.705][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.740][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.742][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:54.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.774][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:54.776][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:54.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.794][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:54.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:54.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:54.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:54.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.809][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:54.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:54.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.812][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:54.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.834][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.839][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.844][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:54.846][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.849][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:54.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.864][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.866][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:54.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.868][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.875][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:54.877][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:54.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.886][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.897][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:54.899][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:54.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.909][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:54.910][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:54.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.920][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:54.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:54.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.930][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.932][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:54.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.934][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.942][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.943][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:54.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.945][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.962][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-06-22 16:23:54.963][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:54.965][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-22 16:23:54.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:54.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:54.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:54.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:54.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:54.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:54.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:54.992][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:54.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:54.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:54.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:54.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:55.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.003][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:55.004][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:55.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:55.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.014][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:55.015][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:55.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.020][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:55.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:55.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.025][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:55.026][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:55.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:55.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.036][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:55.037][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:55.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.042][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:55.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.047][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:55.049][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:55.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:55.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:55.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:55.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:55.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:55.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:55.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:55.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:55.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:55.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:55.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:55.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:55.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:55.116][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-06-22 16:23:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:55.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.124][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:55.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:55.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:55.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:55.144][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-22 16:23:55.145][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-06-22 16:23:55.146][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:23:55.148][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-06-22 16:23:55.150][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-22 16:23:55.151][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:23:55.153][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:23:55.154][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:23:55.155][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:23:55.156][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-22 16:23:55.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:55.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:55.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:55.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:55.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:55.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:55.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:55.174][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-06-22 16:23:55.177][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:23:55.179][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:23:55.180][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-06-22 16:23:56.303][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-06-22 16:23:57.620][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:23:57.623][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-06-22 16:23:57.629][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-06-22 16:23:57.633][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-06-22 16:23:57.637][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:23:57.639][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:57.641][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-22 16:23:57.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:57.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:57.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:57.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:57.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:57.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:57.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:57.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.687][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:57.688][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:57.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.693][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:57.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:57.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:57.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:57.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:57.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:57.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:57.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:57.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:57.747][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-06-22 16:23:57.748][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:57.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:57.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.758][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:57.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:57.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:57.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:57.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.767][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:23:57.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:23:57.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:23:57.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:23:57.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:57.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:57.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:57.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:57.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:57.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:57.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:57.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.882][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:57.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.902][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:57.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:57.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.908][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:57.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:57.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.913][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:57.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:57.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.918][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:57.919][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:57.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.922][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.923][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:57.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:57.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.940][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:57.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:57.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.946][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:57.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:57.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.951][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:57.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:57.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.956][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:57.957][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:57.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.959][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.961][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:57.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:57.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.976][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:57.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:57.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:57.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.987][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:57.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:57.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.992][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:57.993][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:57.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:57.995][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:57.997][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:57.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:57.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.028][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.030][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.050][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:58.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.063][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.069][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:58.071][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:58.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.075][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:58.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:58.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.091][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:58.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:58.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.106][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:58.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:58.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:58.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.127][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:58.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.137][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.148][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:58.149][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:23:58.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.168][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.170][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.179][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:58.181][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:58.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.184][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.191][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:58.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:58.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.196][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.203][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:58.205][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:58.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.207][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.215][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:58.217][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:58.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.226][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:23:58.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:58.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.237][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.239][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.249][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:58.251][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:58.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.253][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.270][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-06-22 16:23:58.272][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:23:58.274][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-22 16:23:58.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:58.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:58.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:58.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:58.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:58.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:58.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:23:58.301][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:58.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:58.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.306][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:58.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:58.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.313][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:58.314][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:58.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.319][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:23:58.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:23:58.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.324][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:58.325][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:58.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.330][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:23:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:23:58.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.335][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:58.336][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:58.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:23:58.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:23:58.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.346][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:58.347][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:58.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.352][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:23:58.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:23:58.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.358][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:58.359][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:58.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:58.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:23:58.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:58.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:58.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:58.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:58.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:58.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:23:58.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:58.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:58.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:58.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:58.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:58.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:58.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:58.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:23:58.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:23:58.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:58.429][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-06-22 16:23:58.431][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.437][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:23:58.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:23:58.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:23:58.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:23:58.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:23:58.457][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-22 16:23:58.458][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-06-22 16:23:58.459][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:23:58.461][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-06-22 16:23:58.463][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-22 16:23:58.464][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:23:58.466][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:23:58.467][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:23:58.468][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:23:58.469][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-22 16:23:58.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:23:58.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:23:58.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:23:58.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:23:58.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:23:58.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:23:58.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:23:58.487][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-06-22 16:23:58.490][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:23:58.492][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:23:58.494][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-06-22 16:23:59.840][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-06-22 16:24:01.174][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:01.178][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-06-22 16:24:01.184][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-06-22 16:24:01.188][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-06-22 16:24:01.191][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:01.193][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:24:01.194][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-22 16:24:01.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:01.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:01.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:01.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:01.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:01.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:01.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.230][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:24:01.232][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.236][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:24:01.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:01.290][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-06-22 16:24:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.296][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.306][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:01.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:01.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.316][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:01.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:01.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.321][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:01.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.427][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.447][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:01.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.452][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.459][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.464][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:01.465][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.468][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.469][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:01.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.484][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:01.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:01.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.490][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:01.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:01.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.495][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:01.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:01.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.499][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:01.501][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:01.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.503][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.504][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:01.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:01.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.519][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.530][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.534][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.536][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.538][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.539][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.569][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.570][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.589][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:01.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:01.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:01.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.599][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:01.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.604][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:01.605][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:01.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.609][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:01.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:01.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:01.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:01.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:01.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.639][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:01.640][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:01.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.642][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:01.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:01.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.658][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:24:01.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.664][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.668][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.674][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:24:01.675][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.678][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-22 16:24:01.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.694][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.695][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.698][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.705][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:01.707][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:01.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.716][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.718][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.727][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:01.729][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:01.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.731][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.738][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.740][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.750][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:01.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:01.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.754][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.761][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.762][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.765][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.772][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.773][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.784][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-06-22 16:24:01.786][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:24:01.787][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-22 16:24:01.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:01.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:01.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:01.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:01.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:01.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:01.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:01.805][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.809][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.815][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:01.817][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:01.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.826][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:01.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:01.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.832][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:01.834][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:01.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.836][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.837][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:01.839][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.841][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.842][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:01.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:01.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.850][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:01.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:01.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.856][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.857][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:01.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:01.912][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-06-22 16:24:01.915][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.922][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:01.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:01.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:01.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:01.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.937][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:01.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:01.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.941][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:01.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:01.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.946][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:01.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:01.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:01.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:01.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:01.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.048][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.053][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.070][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.076][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.081][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.086][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:02.087][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:02.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:02.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:02.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:02.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.116][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:02.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:02.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.121][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:02.123][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:02.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.126][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:02.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:02.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.142][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.153][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:02.154][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:02.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.157][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.165][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.167][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.169][ef$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:02.183][biodb::testThat]
biodb.INFO [2024-06-22 16:24:02.184][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-22 16:24:02.185][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:02.186][biodb::testThat]
biodb.DEBUG[2024-06-22 16:24:02.190][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-06-22 16:24:02.191][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-06-22 16:24:02.193][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-06-22 16:24:02.196][cch$loadFileContent] file.exist = [8]: "FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-06-22 16:24:02.409][loadFileContents] Loaded 7 files from cache: [7]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-06-22 16:24:02.410][conn$getEntryContent] 7 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:02.412][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:02.413][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:02.414][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:02.415][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-22 16:24:02.423][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.DEBUG[2024-06-22 16:24:02.425][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:02.427][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:02.428][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.TRACE[2024-06-22 16:24:02.496][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml does not exist.
biodb.TRACE[2024-06-22 16:24:02.497][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:02.499][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:02.500][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml).
biodb.TRACE[2024-06-22 16:24:02.750][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml"
biodb.DEBUG[2024-06-22 16:24:02.760][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:02.762][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-06-22 16:24:02.764][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-06-22 16:24:02.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:02.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:02.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:02.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:02.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:02.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:02.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:02.794][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.798][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.809][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:02.811][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:02.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.816][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:02.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.821][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:02.822][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:02.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.827][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:02.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:02.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.832][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:02.834][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.836][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.839][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.844][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:02.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:02.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.853][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:02.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:02.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.859][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:02.860][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:02.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.874][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:02.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:02.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:02.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:02.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:02.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:02.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:02.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:02.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:02.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:02.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:02.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:02.948][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:02.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:02.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.960][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:02.961][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:02.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:02.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.971][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:02.972][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:02.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.977][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.982][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:02.983][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.988][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:02.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:02.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:02.993][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:02.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:02.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:02.997][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.005][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.006][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.012][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:03.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:03.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:03.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:03.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:03.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:03.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:03.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:03.096][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.100][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.108][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.110][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.116][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.121][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.122][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.124][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.128][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.133][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.134][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.140][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.145][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.146][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.152][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.157][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.159][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.161][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.167][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:03.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:03.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:03.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:03.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:03.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:03.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:03.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:03.246][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.258][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.259][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.264][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.270][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.271][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.273][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.276][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.281][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.283][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.285][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.288][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.293][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.297][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.305][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.306][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.313][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:03.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:03.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:03.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:03.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:03.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:03.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:03.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:03.410][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.424][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.425][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.432][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.437][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.439][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.446][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.456][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.458][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.464][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.470][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.478][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.483][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.484][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.487][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.496][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:03.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:03.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:03.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:03.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:03.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:03.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:03.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:03.575][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.587][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.588][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.592][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.598][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.599][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.601][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.603][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.609][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.610][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.612][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.615][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.620][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.626][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.631][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.632][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.634][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:03.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:03.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:03.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:03.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:03.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:03.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:03.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:03.709][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.713][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.721][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.722][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.724][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.727][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.732][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.733][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.735][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.737][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.743][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.744][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.746][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.749][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.754][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.755][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.759][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.764][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.766][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.771][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:03.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:03.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:03.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:03.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:03.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:03.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:03.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:03.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:03.835][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.846][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.848][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.851][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-22 16:24:03.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-22 16:24:03.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.856][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-22 16:24:03.858][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-22 16:24:03.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.861][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.863][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.867][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-22 16:24:03.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-22 16:24:03.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.872][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-22 16:24:03.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:03.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.877][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.878][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-22 16:24:03.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.880][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-22 16:24:03.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:03.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:03.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:03.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:04.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:04.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:04.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:04.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:04.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:04.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:04.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:04.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:04.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:04.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:04.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:04.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:04.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:04.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:04.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:04.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:04.040][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-06-22 16:24:04.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:04.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:04.218][biodb::testThat]
biodb.INFO [2024-06-22 16:24:04.220][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-22 16:24:04.221][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:04.222][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:04.226][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:04.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:04.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.229][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:04.231][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-06-22 16:24:04.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:04.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:04.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:04.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:04.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:04.268][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-06-22 16:24:04.275][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-06-22 16:24:04.279][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:04.280][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:04.282][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2024-06-22 16:24:04.333][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2024-06-22 16:24:04.335][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:04.337][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:04.338][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2024-06-22 16:24:04.382][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:04.385][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2024-06-22 16:24:04.390][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2024-06-22 16:24:04.394][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-06-22 16:24:04.418][biodb::testThat]
biodb.INFO [2024-06-22 16:24:04.419][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-22 16:24:04.420][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:04.421][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:04.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:04.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:04.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:04.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:04.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:04.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:04.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:04.478][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-06-22 16:24:04.482][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:04.484][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-06-22 16:24:04.486][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:04.491][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-06-22 16:24:04.516][biodb::testThat]
biodb.INFO [2024-06-22 16:24:04.518][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-22 16:24:04.519][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:04.520][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:04.534][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.545][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:04.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:04.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:04.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:04.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:04.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:04.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:04.565][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-06-22 16:24:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.571][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:04.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:04.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:04.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:04.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:04.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:04.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:04.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:04.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.601][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:04.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:04.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:04.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:04.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:04.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:04.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:04.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:04.626][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:04.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:04.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:04.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:04.639][biodb::testThat]
biodb.INFO [2024-06-22 16:24:04.640][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-22 16:24:04.641][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:04.642][biodb::testThat]
biodb.INFO [2024-06-22 16:24:04.657][biodb::testThat]
biodb.INFO [2024-06-22 16:24:04.659][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-22 16:24:04.660][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:04.661][biodb::testThat]
biodb.INFO [2024-06-22 16:24:04.672][biodb::testThat]
biodb.INFO [2024-06-22 16:24:04.674][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-22 16:24:04.675][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:04.676][biodb::testThat]
biodb.DEBUG[2024-06-22 16:24:04.681][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-06-22 16:24:07.689][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-06-22 16:24:16.489][biodb::testThat]
biodb.INFO [2024-06-22 16:24:16.490][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-22 16:24:16.491][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:16.492][biodb::testThat]
biodb.INFO [2024-06-22 16:24:16.501][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-22 16:24:16.503][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-06-22 16:24:16.504][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-06-22 16:24:16.505][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-06-22 16:24:16.512][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-06-22 16:24:16.513][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-22 16:24:16.515][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:16.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:16.517][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.519][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-22 16:24:16.525][biodb::testContext]
biodb.INFO [2024-06-22 16:24:16.526][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-22 16:24:16.527][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-06-22 16:24:16.528][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-22 16:24:16.530][biodb::testContext]
biodb.INFO [2024-06-22 16:24:16.533][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-22 16:24:16.536][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-22 16:24:16.541][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:24:16.543][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-22 16:24:16.544][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-22 16:24:16.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.548][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-22 16:24:16.550][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-22 16:24:16.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.554][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-22 16:24:16.555][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-22 16:24:16.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.560][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-22 16:24:16.561][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-22 16:24:16.562][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-22 16:24:16.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.567][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-22 16:24:16.568][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-22 16:24:16.569][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-22 16:24:16.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.574][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-22 16:24:16.576][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-22 16:24:16.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.580][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-22 16:24:16.581][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-22 16:24:16.582][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-22 16:24:16.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.587][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-22 16:24:16.588][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-22 16:24:16.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.593][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-22 16:24:16.594][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-22 16:24:16.595][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-22 16:24:16.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.600][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-22 16:24:16.601][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-22 16:24:16.602][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-22 16:24:16.603][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-22 16:24:16.604][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-22 16:24:16.606][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-22 16:24:16.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.610][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-22 16:24:16.611][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-22 16:24:16.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.616][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-22 16:24:16.617][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-22 16:24:16.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.622][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-22 16:24:16.623][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-22 16:24:16.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.627][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-22 16:24:16.629][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-22 16:24:16.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.633][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-22 16:24:16.634][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-22 16:24:16.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.639][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-22 16:24:16.640][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-22 16:24:16.644][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-22 16:24:16.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.649][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-22 16:24:16.650][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-22 16:24:16.651][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-22 16:24:16.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.656][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-22 16:24:16.658][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.659][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-22 16:24:16.660][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.662][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:24:16.663][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.664][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.665][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.666][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.667][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-22 16:24:16.669][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:24:16.670][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.671][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-22 16:24:16.672][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:24:16.674][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.675][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.676][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:24:16.676][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:24:16.676][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:24:16.676][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-22 16:24:16.676][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-22 16:24:16.677][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:24:16.678][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:16.680][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:16.681][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:24:16.682][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:16.683][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:16.685][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.686][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.687][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:24:16.688][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:24:16.690][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.691][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.692][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-22 16:24:16.694][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.695][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-22 16:24:16.697][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.698][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:24:16.699][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.700][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.701][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.703][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.704][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-22 16:24:16.705][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:24:16.706][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.707][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-22 16:24:16.709][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:24:16.710][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.711][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.712][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:24:16.712][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:24:16.712][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:24:16.712][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-22 16:24:16.712][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-22 16:24:16.713][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:24:16.714][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:16.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:16.717][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:24:16.718][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:16.719][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:16.721][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.722][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.723][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:24:16.724][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:24:16.725][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.726][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.728][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-22 16:24:16.730][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.731][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-22 16:24:16.732][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.733][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:24:16.735][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.736][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.737][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.738][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.740][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-22 16:24:16.741][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:24:16.742][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.743][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-22 16:24:16.744][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:24:16.745][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.747][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.748][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.749][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:24:16.750][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:16.751][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:16.752][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:24:16.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:16.755][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:16.756][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.757][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.758][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:24:16.759][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:24:16.761][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.762][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.764][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-22 16:24:16.766][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.767][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-22 16:24:16.768][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.769][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:24:16.770][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.772][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.773][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.774][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.775][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-22 16:24:16.784][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:24:16.786][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.787][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-22 16:24:16.788][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:24:16.789][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.790][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:16.792][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.793][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:24:16.794][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:16.795][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:16.796][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:24:16.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:16.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:16.800][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:24:16.801][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.802][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:24:16.803][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:24:16.804][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:16.805][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:16.807][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:24:16.808][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:16.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:16.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:16.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:16.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:16.908][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-22 16:24:16.910][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-22 16:24:16.911][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-22 16:24:16.913][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-22 16:24:16.914][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-22 16:24:16.916][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-22 16:24:16.918][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-22 16:24:16.919][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-22 16:24:16.921][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-22 16:24:16.922][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-22 16:24:16.924][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-22 16:24:16.926][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-22 16:24:16.927][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-22 16:24:16.929][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-22 16:24:16.930][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-22 16:24:16.932][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-22 16:24:16.933][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-22 16:24:16.935][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-22 16:24:16.937][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-22 16:24:16.938][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-22 16:24:16.940][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-22 16:24:16.941][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-22 16:24:16.943][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-22 16:24:16.944][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-22 16:24:16.946][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-22 16:24:16.948][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-22 16:24:16.949][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-22 16:24:16.951][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-22 16:24:16.952][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-22 16:24:16.954][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-22 16:24:16.955][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-22 16:24:16.957][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-22 16:24:16.959][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-22 16:24:16.960][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-22 16:24:16.962][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-22 16:24:16.963][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-22 16:24:16.965][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-22 16:24:16.966][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-22 16:24:16.968][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-22 16:24:16.969][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-22 16:24:16.971][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-22 16:24:16.973][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-22 16:24:16.974][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-22 16:24:16.976][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-22 16:24:16.977][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-22 16:24:16.979][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-22 16:24:16.981][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-22 16:24:16.982][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-22 16:24:16.984][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-22 16:24:16.985][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-22 16:24:16.987][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-22 16:24:16.988][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-22 16:24:16.990][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-22 16:24:16.992][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-22 16:24:16.993][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-22 16:24:16.995][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-22 16:24:16.996][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-22 16:24:16.998][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-22 16:24:16.999][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-22 16:24:17.001][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-22 16:24:17.003][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-22 16:24:17.004][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-22 16:24:17.006][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-22 16:24:17.007][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-22 16:24:17.009][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-22 16:24:17.010][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-22 16:24:17.012][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-22 16:24:17.014][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-22 16:24:17.015][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-22 16:24:17.017][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-22 16:24:17.018][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-22 16:24:17.020][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-22 16:24:17.021][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-22 16:24:17.023][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-22 16:24:17.025][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-22 16:24:17.026][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-22 16:24:17.028][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-22 16:24:17.029][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-22 16:24:17.031][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-22 16:24:17.032][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-22 16:24:17.034][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-22 16:24:17.036][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-22 16:24:17.037][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-22 16:24:17.039][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-22 16:24:17.042][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-22 16:24:17.043][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:24:17.044][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.046][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:24:17.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:17.182][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-22 16:24:17.185][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-22 16:24:17.187][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.188][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-22 16:24:17.189][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.191][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:24:17.192][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.193][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.194][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.196][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.203][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-22 16:24:17.204][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:24:17.205][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.206][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-22 16:24:17.208][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:24:17.209][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-22 16:24:17.209][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-22 16:24:17.210][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:17.211][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:17.212][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-22 16:24:17.214][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:17.215][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:17.216][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:24:17.217][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:17.218][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:17.219][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.220][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:24:17.220][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-22 16:24:17.222][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:24:17.223][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:24:17.224][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.225][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:17.226][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-22 16:24:17.228][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.230][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-22 16:24:17.231][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.232][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:24:17.233][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.234][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.235][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.237][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.238][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:24:17.239][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:24:17.240][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.242][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-22 16:24:17.243][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:24:17.244][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-22 16:24:17.244][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-22 16:24:17.244][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-22 16:24:17.244][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-22 16:24:17.244][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-22 16:24:17.244][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-22 16:24:17.245][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:17.246][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:24:17.248][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-22 16:24:17.249][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:17.250][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:17.251][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:24:17.252][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:17.253][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:17.255][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.256][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:17.256][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:24:17.257][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:24:17.258][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:24:17.259][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.260][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:17.262][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-22 16:24:17.264][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:17.265][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-22 16:24:17.266][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.267][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:24:17.269][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.270][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.271][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.272][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.273][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:24:17.275][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:24:17.276][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.277][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-22 16:24:17.278][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.279][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:24:17.281][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:17.282][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:24:17.282][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:24:17.282][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:24:17.283][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-22 16:24:17.285][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:17.286][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:17.287][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:24:17.288][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:17.289][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:17.290][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.291][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:17.291][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:24:17.291][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-22 16:24:17.293][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:24:17.294][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:24:17.295][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.296][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-22 16:24:17.298][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-22 16:24:17.300][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.301][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-22 16:24:17.302][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.303][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:24:17.304][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.306][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.307][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.308][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.309][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:24:17.310][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:24:17.312][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.313][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-22 16:24:17.314][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:24:17.315][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-22 16:24:17.315][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-22 16:24:17.316][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:24:17.318][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:24:17.319][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-22 16:24:17.320][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:17.321][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:17.322][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:24:17.324][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:24:17.325][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:24:17.326][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:24:17.327][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:17.327][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:24:17.327][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-22 16:24:17.328][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:24:17.329][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:24:17.331][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:24:17.332][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-22 16:24:17.333][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-22 16:24:17.335][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-22 16:24:17.337][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-22 16:24:17.338][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-22 16:24:17.340][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-22 16:24:17.342][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-22 16:24:17.349][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-22 16:24:17.350][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-06-22 16:24:17.352][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-22 16:24:17.353][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-06-22 16:24:17.355][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-22 16:24:17.356][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-22 16:24:17.358][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-06-22 16:24:17.359][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-22 16:24:17.361][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-22 16:24:17.362][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-22 16:24:17.368][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-06-22 16:24:17.374][biodb::testThat]
biodb.INFO [2024-06-22 16:24:17.376][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-22 16:24:17.377][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:17.378][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:17.383][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-06-22 16:24:17.384][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:24:17.387][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:17.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:17.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:17.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:17.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:17.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:17.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:17.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:17.407][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.411][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.418][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:17.419][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:17.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:17.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:17.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.428][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:17.429][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:17.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:17.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:17.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.438][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:17.439][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:17.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:17.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.448][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:17.450][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:17.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.452][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:17.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:17.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.459][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:17.460][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:17.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:17.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:17.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.469][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:17.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:17.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.474][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:17.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:17.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.479][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:17.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:17.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.483][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:17.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:17.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:17.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:17.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:17.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:17.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:17.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:17.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.503][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.509][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:17.511][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:17.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.513][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.515][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:17.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:17.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.520][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:17.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:17.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.523][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.530][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:17.531][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:17.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:17.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:17.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.540][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:17.542][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:17.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:17.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.551][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:17.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:17.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:17.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.565][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:17.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:17.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:17.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:17.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:17.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:17.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.595][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:17.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:17.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:17.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:17.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:17.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.610][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:17.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:17.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:17.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:17.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:17.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:17.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:17.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:17.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:17.688][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-06-22 16:24:17.691][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:17.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:17.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.696][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:17.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:17.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:17.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:17.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.706][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:17.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:17.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.710][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:17.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:17.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:17.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:17.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:17.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:17.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:17.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.822][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.826][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:17.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:17.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.842][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:17.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:17.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:17.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:17.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.858][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:17.859][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:17.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.861][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.862][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:17.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:17.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:17.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:17.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:17.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:17.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:17.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:17.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.894][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:17.895][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:17.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:17.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:17.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:17.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:17.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:17.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:17.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.933][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:17.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:17.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:17.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.953][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:17.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:17.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.958][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.963][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:17.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:17.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.968][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:17.969][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:17.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:17.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:17.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:17.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:17.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:17.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:17.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.005][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.007][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.040][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.041][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.076][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.078][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.119][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.120][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.154][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.156][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.158][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.193][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.194][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.237][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.238][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:18.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:18.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:18.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:18.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:18.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:18.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.276][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:18.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:18.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.280][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:18.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:18.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.312][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.314][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:18.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:18.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:18.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:18.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:18.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:18.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:18.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:18.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.349][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:18.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:18.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.366][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.367][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.377][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.378][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.388][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.389][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.392][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.399][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.400][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.402][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.410][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.411][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.413][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.421][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.422][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.425][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.432][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:18.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:18.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:18.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:18.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.447][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.456][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.466][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:18.467][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:18.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.470][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.477][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:18.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:18.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:18.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:18.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.492][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.499][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:18.501][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:18.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.503][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.510][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.512][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.521][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.523][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.525][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.534][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-06-22 16:24:18.536][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:24:18.538][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:18.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:18.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:18.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:18.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:18.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:18.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:18.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:18.556][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.557][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.566][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.568][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.577][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.578][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.580][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.593][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.595][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.604][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.605][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.614][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.615][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.617][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.624][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:18.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:18.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.628][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.629][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:18.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.634][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:18.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:18.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:18.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:18.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:18.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:18.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:18.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:18.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.656][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:18.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.665][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:18.666][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:18.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.669][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.670][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:18.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:18.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.675][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:18.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:18.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:18.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:18.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.686][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.688][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:18.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.696][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.698][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:18.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.707][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:18.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:18.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.722][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:18.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:18.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.737][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:18.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:18.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:18.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:18.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.766][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:18.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:18.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:18.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:18.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:18.835][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-06-22 16:24:18.838][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:18.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:18.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.843][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:18.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:18.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:18.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:18.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:18.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:18.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:18.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.863][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:18.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:18.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.867][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:18.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:18.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:18.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.970][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.971][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:18.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:18.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:18.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:18.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:18.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:18.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:18.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:18.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:19.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:19.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:19.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:19.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:19.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:19.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.210][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.211][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:19.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:19.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:19.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:19.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:19.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:19.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.244][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:19.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:19.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:19.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.263][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:19.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.268][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:19.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:19.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.273][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:19.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:19.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.278][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:19.279][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:19.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.283][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:19.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:19.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.312][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.314][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.347][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.348][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.382][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.383][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.385][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:19.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:19.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:19.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:19.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:19.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:19.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:19.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.450][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.452][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.454][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.485][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.486][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.488][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.520][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.521][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.523][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.555][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.556][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.559][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.590][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.591][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.594][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:19.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:19.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:19.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:19.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:19.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:19.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.625][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:19.626][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:19.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.629][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:19.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.650][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:19.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:19.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.664][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.666][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.675][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.676][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.686][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.687][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.696][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.698][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.707][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.709][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.718][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:19.719][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.728][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:19.730][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:19.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.732][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.743][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.750][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:19.751][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:19.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.754][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.761][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:19.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.765][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.772][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:19.773][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:19.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.783][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:19.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:19.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.793][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.795][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:19.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.797][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.804][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.806][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:19.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.808][ef$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:19.821][biodb::testThat]
biodb.INFO [2024-06-22 16:24:19.822][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-22 16:24:19.823][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:19.825][biodb::testThat]
biodb.DEBUG[2024-06-22 16:24:19.828][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-06-22 16:24:19.829][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-22 16:24:19.833][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-06-22 16:24:19.835][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-06-22 16:24:19.860][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-06-22 16:24:19.862][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:19.864][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-22 16:24:19.865][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:19.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:19.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:19.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:19.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:19.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:19.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:19.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:19.883][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:19.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:19.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:19.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.893][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.894][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.903][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.905][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.919][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.920][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.922][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.929][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.930][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:19.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.939][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.940][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:19.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.949][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:19.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:19.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.954][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:19.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:19.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.959][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:19.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:19.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:19.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:19.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:19.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:19.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:19.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:19.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.980][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.981][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:19.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.990][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:19.991][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:19.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:19.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:19.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:19.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.000][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:20.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:20.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.004][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:20.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.010][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:20.011][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:20.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:20.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:20.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.020][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:20.021][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:20.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:20.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:20.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.030][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:20.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:20.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.059][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:20.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.074][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:20.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.089][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:20.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:20.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:20.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:20.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:20.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:20.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:20.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:20.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:20.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:20.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:20.163][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.174][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.175][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.177][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.184][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.185][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.187][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.194][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.195][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.204][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.205][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.207][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.214][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.215][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.224][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:20.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:20.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.227][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.229][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:20.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:20.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.234][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:20.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:20.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:20.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:20.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:20.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:20.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:20.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:20.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:20.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:20.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:20.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:20.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.264][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:20.265][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:20.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.269][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:20.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:20.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.274][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:20.275][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:20.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:20.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.284][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:20.285][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:20.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.287][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:20.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:20.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.294][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:20.295][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:20.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.297][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:20.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:20.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.318][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:20.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.332][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:20.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:20.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.346][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:20.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:20.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.361][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:20.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:20.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:20.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:20.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:20.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:20.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:20.443][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-06-22 16:24:20.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:20.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:20.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:20.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:20.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:20.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:20.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:20.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:24:20.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:20.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:24:20.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:24:20.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:20.491][biodb::testThat]
biodb.INFO [2024-06-22 16:24:20.492][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-22 16:24:20.493][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:20.495][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:20.498][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:20.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:20.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.502][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:20.504][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-06-22 16:24:20.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:20.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:20.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:20.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:20.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:20.540][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-06-22 16:24:20.546][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-22 16:24:20.550][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:20.552][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-22 16:24:20.554][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:20.566][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-06-22 16:24:20.568][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-06-22 16:24:20.588][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:20.589][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:20.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.592][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:20.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:20.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.597][ef$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:20.609][biodb::testThat]
biodb.INFO [2024-06-22 16:24:20.610][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-22 16:24:20.611][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:20.612][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:20.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:20.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:20.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:20.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:20.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:20.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:20.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-22 16:24:20.674][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:20.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-22 16:24:20.677][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:20.680][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-06-22 16:24:20.705][biodb::testThat]
biodb.INFO [2024-06-22 16:24:20.706][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-22 16:24:20.707][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:20.708][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.727][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:20.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:20.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:20.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.741][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:20.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:20.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.746][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:20.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:20.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.751][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:20.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:20.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.757][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:20.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.762][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:24:20.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:24:20.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:24:20.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.772][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:20.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:20.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.776][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:24:20.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:24:20.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.781][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:20.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:24:20.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:20.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:20.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:24:20.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:20.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:20.799][biodb::testThat]
biodb.INFO [2024-06-22 16:24:20.801][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-22 16:24:20.802][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:20.803][biodb::testThat]
biodb.INFO [2024-06-22 16:24:20.815][biodb::testThat]
biodb.INFO [2024-06-22 16:24:20.816][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-22 16:24:20.817][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:20.818][biodb::testThat]
biodb.INFO [2024-06-22 16:24:20.831][biodb::testThat]
biodb.INFO [2024-06-22 16:24:20.832][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-22 16:24:20.833][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:20.835][biodb::testThat]
biodb.DEBUG[2024-06-22 16:24:20.839][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-06-22 16:24:20.966][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-06-22 16:24:21.087][biodb::testThat]
biodb.INFO [2024-06-22 16:24:21.088][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-22 16:24:21.090][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:21.091][biodb::testThat]
biodb.DEBUG[2024-06-22 16:24:21.169][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-06-22 16:24:21.292][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:21.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:21.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.296][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:21.297][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.301][ef$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:21.303][biodb::testThat]
biodb.INFO [2024-06-22 16:24:21.304][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-06-22 16:24:21.305][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:21.306][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:21.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:21.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:21.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:21.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:21.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:21.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:21.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:21.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:21.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-22 16:24:21.722][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:21.723][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-22 16:24:21.725][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:21.728][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-06-22 16:24:21.799][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-22 16:24:21.803][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:21.804][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-22 16:24:21.806][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:21.809][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-06-22 16:24:21.829][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:21.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:21.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:21.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:21.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:21.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:21.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:21.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:21.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:21.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:21.876][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:21.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-22 16:24:21.880][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:21.892][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-22 16:24:21.913][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-06-22 16:24:21.917][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:21.919][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-06-22 16:24:21.921][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:21.947][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-06-22 16:24:22.244][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-06-22 16:24:22.249][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:22.250][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-06-22 16:24:22.252][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:22.266][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-06-22 16:24:22.298][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-06-22 16:24:22.302][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:22.303][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-06-22 16:24:22.305][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:22.320][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-06-22 16:24:22.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:22.376][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:22.380][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:22.382][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-06-22 16:24:22.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:22.397][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-06-22 16:24:22.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-06-22 16:24:22.430][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:22.432][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-06-22 16:24:22.434][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:22.448][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-06-22 16:24:22.471][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-06-22 16:24:22.474][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:22.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-06-22 16:24:22.478][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:22.492][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-06-22 16:24:22.527][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-06-22 16:24:22.531][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:22.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-06-22 16:24:22.534][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:22.538][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-06-22 16:24:22.563][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:22.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:22.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:22.580][biodb::testThat]
biodb.INFO [2024-06-22 16:24:22.581][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-06-22 16:24:22.582][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:22.583][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:22.587][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:22.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.592][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:22.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:22.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:22.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:22.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:22.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:22.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:22.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:22.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:22.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:22.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:22.662][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:22.664][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-22 16:24:22.665][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:22.668][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-22 16:24:22.670][private$loadEntries] Creating entries from ids [3]: "171384817, 171380427, 171378033".
biodb.DEBUG[2024-06-22 16:24:22.671][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-22 16:24:22.673][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171384817, 171380427, 171378033".
biodb.TRACE[2024-06-22 16:24:22.675][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-06-22 16:24:22.716][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171384817.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380427.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171378033.xml".
biodb.DEBUG[2024-06-22 16:24:22.717][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:22.719][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-22 16:24:22.721][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:22.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:22.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:22.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:22.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:22.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:22.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:22.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:22.739][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:22.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:22.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:22.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:22.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.749][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:22.750][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:22.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:22.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.759][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:22.760][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:22.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:22.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:22.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.769][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:22.771][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:22.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.773][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:22.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:22.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.780][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:22.781][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:22.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:22.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:22.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.790][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:22.791][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:22.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:22.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.800][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:22.801][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.804][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.805][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:22.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:22.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.810][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:22.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:22.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.814][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:22.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:22.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.820][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:22.821][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:22.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:22.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:22.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.830][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:22.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:22.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.834][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:22.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:22.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.841][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:22.842][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:22.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.846][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:22.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:22.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.851][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:22.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.855][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:22.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:22.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.861][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:22.863][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:22.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:22.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:22.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.872][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:22.873][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:22.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:22.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:22.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:22.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:22.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:22.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:22.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:22.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:22.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.898][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:22.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:22.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:22.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:22.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:22.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:22.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.915][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:22.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:22.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:22.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:22.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:22.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:22.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.930][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:22.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:22.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:22.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:22.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:22.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.951][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:22.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:22.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:22.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:22.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:22.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:22.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:22.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:22.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:22.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:22.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:22.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:22.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:22.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:22.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:22.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:22.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:22.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:23.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:23.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:23.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:23.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:23.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:23.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:23.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:23.021][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.032][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.033][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.035][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.042][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.043][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.052][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.053][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.062][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.064][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.066][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.073][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.074][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.083][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:23.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:23.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.086][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.088][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.093][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:23.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:23.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:23.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:23.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:23.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:23.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:23.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:23.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:23.114][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:23.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:23.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:23.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.123][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:23.125][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:23.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.128][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:23.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:23.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.133][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:23.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:23.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:23.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:23.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.144][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:23.145][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:23.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:23.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:23.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.154][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:23.155][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:23.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.157][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:23.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:23.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.164][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:23.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.208][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:23.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:23.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:23.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:23.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:23.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:23.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:23.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:23.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:23.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:23.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:23.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:23.293][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.297][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.304][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.305][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.314][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.315][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.324][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.326][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.335][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.336][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.345][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.346][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.348][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.355][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:23.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:23.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:23.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:23.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.366][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:23.367][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:23.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.369][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:23.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.382][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:23.383][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:23.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.385][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:23.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:23.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:23.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:23.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.395][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:23.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:23.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.402][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:23.403][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:23.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.407][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:23.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:23.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.412][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:23.413][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:23.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:23.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:23.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.422][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:23.424][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:23.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:23.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:23.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.432][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:23.434][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:23.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:23.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.457][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:23.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:23.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.472][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:23.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:23.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.486][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:23.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:23.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.500][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:23.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:23.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:23.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:23.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:23.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:23.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:23.597][self$createEntryFromContent] Accession numbers: 171384817, 171380427, 171378033.
biodb.DEBUG[2024-06-22 16:24:23.598][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:23.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:23.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:23.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:23.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:23.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:23.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:23.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:23.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.625][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.626][private$selectFields]
biodb.TRACE[2024-06-22 16:24:23.627][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:23.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:23.629][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.634][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.641][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.647][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:23.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-22 16:24:23.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:23.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:23.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:23.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:23.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:23.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:23.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:23.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.697][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.698][private$selectFields]
biodb.TRACE[2024-06-22 16:24:23.699][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:23.700][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:23.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.706][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.712][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.714][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.718][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.720][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.736][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-06-22 16:24:23.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:23.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:23.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:23.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:23.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:23.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:23.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:23.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.762][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.763][private$selectFields]
biodb.TRACE[2024-06-22 16:24:23.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:23.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:23.766][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.773][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.778][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.779][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:23.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.791][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:23.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:23.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:23.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:23.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-22 16:24:23.808][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:23.809][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:23.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:23.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:23.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:23.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:23.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:23.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:23.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:23.832][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:23.837][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:23.838][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:23.840][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:23.895][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:23.896][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:23.899][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:23.901][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:23.953][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:23.955][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-06-22 16:24:23.961][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-06-22 16:24:23.964][private$loadEntries] Creating entries from ids [3]: "171385155, 171385152, 171385150".
biodb.DEBUG[2024-06-22 16:24:23.965][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-22 16:24:23.967][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171385155, 171385152, 171385150".
biodb.TRACE[2024-06-22 16:24:23.970][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-22 16:24:23.971][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:24:23.973][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:23.974][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:23.975][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:23.976][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:23.977][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-22 16:24:23.980][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171385155,171385152,171385150/XML".
biodb.DEBUG[2024-06-22 16:24:23.982][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:23.984][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:23.985][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171385155,171385152,171385150/XML".
biodb.TRACE[2024-06-22 16:24:24.061][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171385155,171385152,171385150/XML).
biodb.TRACE[2024-06-22 16:24:24.207][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171385155.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171385152.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171385150.xml"
biodb.DEBUG[2024-06-22 16:24:24.213][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:24.215][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-22 16:24:24.217][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:24.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:24.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:24.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:24.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:24.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:24.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:24.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:24.235][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.245][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.246][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.248][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.255][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.256][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.259][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.265][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.266][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.275][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.277][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.285][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.287][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.295][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:24.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:24.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:24.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.305][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:24.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:24.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.309][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:24.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:24.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:24.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:24.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:24.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:24.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.336][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:24.337][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:24.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.341][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:24.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:24.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.346][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:24.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:24.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.349][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:24.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:24.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.356][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.357][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.366][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.367][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.369][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.376][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:24.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:24.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:24.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.419][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:24.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.433][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:24.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:24.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:24.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:24.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:24.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:24.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:24.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:24.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:24.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:24.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.513][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.514][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.517][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.523][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.525][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.534][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.541][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.552][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.553][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.555][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.562][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.563][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.565][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.572][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:24.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:24.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.575][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:24.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:24.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.582][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:24.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:24.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.585][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:24.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:24.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:24.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.595][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:24.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:24.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.602][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.603][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.612][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:24.613][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:24.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.615][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.617][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:24.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:24.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.622][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:24.623][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:24.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.625][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:24.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:24.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.632][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.633][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.642][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.643][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.652][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:24.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:24.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.681][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:24.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.696][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:24.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.710][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:24.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:24.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:24.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:24.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:24.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:24.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:24.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:24.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:24.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:24.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:24.780][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:24.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:24.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.790][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.791][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.800][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.802][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.804][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:24.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.810][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.812][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.814][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.820][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.822][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.831][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.832][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.834][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.841][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:24.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:24.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.846][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:24.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:24.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.851][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:24.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:24.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:24.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:24.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:24.862][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:24.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:24.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:24.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:24.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.881][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:24.883][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:24.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.887][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:24.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:24.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.892][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:24.893][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:24.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.895][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:24.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.903][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.905][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:24.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.919][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.920][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:24.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.933][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:24.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:24.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.952][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:24.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.967][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:24.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:24.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.988][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:24.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:24.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:24.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:24.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.003][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:25.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:25.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:25.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:25.099][self$createEntryFromContent] Accession numbers: 171385155, 171385152, 171385150.
biodb.DEBUG[2024-06-22 16:24:25.119][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:25.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:25.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:25.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:25.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:25.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:25.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:25.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:25.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.164][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.165][private$selectFields]
biodb.TRACE[2024-06-22 16:24:25.166][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:25.168][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:25.169][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.170][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.171][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.174][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.175][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.176][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.180][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.181][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.183][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.186][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.187][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:25.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-22 16:24:25.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:25.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:25.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:25.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:25.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:25.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:25.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:25.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.229][private$selectFields]
biodb.TRACE[2024-06-22 16:24:25.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:25.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:25.232][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.243][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.244][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.247][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.250][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:25.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-22 16:24:25.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:25.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:25.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:25.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:25.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:25.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:25.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:25.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.292][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.293][private$selectFields]
biodb.TRACE[2024-06-22 16:24:25.295][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:25.296][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:25.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.298][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.299][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.302][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.308][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.309][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:25.310][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.314][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.315][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:25.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-22 16:24:25.335][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:25.336][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-22 16:24:25.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:25.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:25.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:25.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:25.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:25.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:25.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:25.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:25.457][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:25.461][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:25.462][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-22 16:24:25.464][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:25.476][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-22 16:24:25.478][private$loadEntries] Creating entries from ids [2]: "130032437, 171372625".
biodb.DEBUG[2024-06-22 16:24:25.479][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-22 16:24:25.481][cch$loadFileContent] Trying to load 2 files from cache: [2]: "130032437, 171372625".
biodb.TRACE[2024-06-22 16:24:25.483][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-06-22 16:24:25.507][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/130032437.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171372625.xml".
biodb.DEBUG[2024-06-22 16:24:25.509][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:25.511][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-22 16:24:25.512][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:25.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:25.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:25.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:25.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:25.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:25.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:25.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:25.530][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.533][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.540][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.541][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.543][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.550][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.551][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.560][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.561][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.563][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.570][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.571][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.574][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.580][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.581][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.583][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.590][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:25.591][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.595][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:25.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.600][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:25.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:25.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:25.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:25.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:25.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.613][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:25.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:25.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:25.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:25.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:25.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:25.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.630][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:25.631][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:25.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.635][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:25.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:25.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.640][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:25.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:25.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.643][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:25.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.650][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:25.651][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:25.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:25.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:25.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.660][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:25.661][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:25.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.663][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:25.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:25.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.670][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:25.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.685][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:25.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.699][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:25.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:25.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.729][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:25.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:25.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:25.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:25.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:25.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:25.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:25.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:25.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:25.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:25.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:25.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:25.805][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.809][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:25.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:25.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.815][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.816][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.825][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.826][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:25.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.835][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.836][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.845][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.855][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.857][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.865][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:25.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.870][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:25.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:25.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.875][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:25.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:25.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:25.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:25.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:25.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.889][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:25.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:25.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:25.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.899][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:25.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.907][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:25.909][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:25.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.913][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.914][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:25.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:25.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.919][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:25.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:25.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:25.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:25.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.929][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:25.931][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:25.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.933][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.939][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:25.941][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:25.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.943][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:25.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.964][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:25.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:25.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.978][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:25.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.992][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:25.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:25.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:25.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:25.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:26.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:26.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:26.088][self$createEntryFromContent] Accession numbers: 130032437, 171372625.
biodb.DEBUG[2024-06-22 16:24:26.089][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:26.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:26.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:26.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:26.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:26.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:26.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:26.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:26.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.117][private$selectFields]
biodb.TRACE[2024-06-22 16:24:26.118][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:26.119][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:26.120][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.126][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.127][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.129][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.131][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.132][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.133][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.134][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.138][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:26.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.154][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-22 16:24:26.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:26.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:26.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:26.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:26.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:26.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:26.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.213][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.214][private$selectFields]
biodb.TRACE[2024-06-22 16:24:26.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:26.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:26.218][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.224][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.227][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.237][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.243][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:26.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-22 16:24:26.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:26.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:26.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:26.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:26.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:26.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:26.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:26.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.284][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.285][private$selectFields]
biodb.TRACE[2024-06-22 16:24:26.286][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:26.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:26.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.300][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:26.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.303][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.306][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:26.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:26.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-06-22 16:24:26.323][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:26.325][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:26.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:26.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:26.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:26.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:26.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:26.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:26.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:26.347][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:26.350][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:26.352][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:26.354][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:26.413][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:26.415][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:26.416][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:26.418][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:26.463][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:26.466][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-06-22 16:24:26.471][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-06-22 16:24:26.475][private$loadEntries] Creating entries from ids [3]: "171384639, 171374155, 171374057".
biodb.DEBUG[2024-06-22 16:24:26.477][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-22 16:24:26.480][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171384639, 171374155, 171374057".
biodb.TRACE[2024-06-22 16:24:26.481][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-22 16:24:26.483][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:24:26.484][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:26.486][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:26.487][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:26.488][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:26.503][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-22 16:24:26.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171384639,171374155,171374057/XML".
biodb.DEBUG[2024-06-22 16:24:26.509][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:26.510][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:26.512][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171384639,171374155,171374057/XML".
biodb.TRACE[2024-06-22 16:24:26.608][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171384639,171374155,171374057/XML).
biodb.TRACE[2024-06-22 16:24:26.761][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171384639.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374155.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374057.xml"
biodb.DEBUG[2024-06-22 16:24:26.766][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:26.768][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-22 16:24:26.770][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:26.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:26.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:26.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:26.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:26.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:26.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:26.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:26.787][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:26.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.797][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:26.799][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:26.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.801][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:26.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.807][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:26.809][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:26.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:26.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:26.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.818][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:26.819][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:26.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.821][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.828][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.829][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.838][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:26.840][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:26.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.842][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:26.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:26.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.849][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:26.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:26.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.854][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:26.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:26.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.859][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:26.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:26.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.863][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:26.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:26.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:26.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.873][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:26.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.879][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:26.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:26.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:26.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.890][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:26.891][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:26.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.895][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:26.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.900][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:26.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:26.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.904][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:26.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:26.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.911][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:26.912][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:26.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.922][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:26.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:26.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.929][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:26.930][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:26.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.933][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.939][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:26.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:26.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:26.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:26.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:26.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.954][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:26.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:26.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:26.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:26.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:26.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:26.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.968][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:26.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:26.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:26.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:26.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:27.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:27.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:27.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:27.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:27.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:27.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:27.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:27.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:27.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:27.066][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.067][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.076][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.077][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.079][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.086][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.087][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.096][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.097][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.099][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.106][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.107][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.116][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.117][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.126][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:27.127][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:27.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.130][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.131][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:27.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.136][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:27.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:27.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.140][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:27.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:27.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:27.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:27.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.150][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:27.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:27.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.156][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:27.157][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:27.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.166][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:27.167][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:27.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.170][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.171][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:27.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.181][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:27.183][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:27.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.185][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:27.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:27.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.191][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:27.193][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:27.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.201][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.216][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:27.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.231][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:27.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.245][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:27.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.260][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:27.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:27.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:27.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:27.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:27.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:27.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:27.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:27.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:27.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:27.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:27.331][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.341][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.347][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.348][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.357][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.359][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.367][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.369][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.377][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.379][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.388][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.389][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.398][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:27.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:27.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.401][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.403][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:27.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.408][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:27.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:27.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.411][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:27.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:27.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.418][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:27.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:27.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:27.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:27.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:27.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:27.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:27.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.438][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:27.439][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:27.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.443][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:27.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.447][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.453][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:27.455][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:27.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:27.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.463][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:27.465][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:27.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:27.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:27.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.474][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:27.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.488][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:27.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:27.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.503][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:27.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.517][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:27.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.532][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:27.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:27.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:27.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:27.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:27.628][self$createEntryFromContent] Accession numbers: 171384639, 171374155, 171374057.
biodb.DEBUG[2024-06-22 16:24:27.630][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:27.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:27.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:27.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:27.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:27.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:27.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:27.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.656][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.657][private$selectFields]
biodb.TRACE[2024-06-22 16:24:27.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:27.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:27.660][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.663][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.665][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.671][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.672][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.678][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:27.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.694][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-22 16:24:27.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:27.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:27.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:27.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:27.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:27.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:27.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.721][private$selectFields]
biodb.TRACE[2024-06-22 16:24:27.722][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:27.723][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:27.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.735][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.736][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.742][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:27.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.765][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-06-22 16:24:27.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:27.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:27.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:27.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:27.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:27.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:27.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.791][private$selectFields]
biodb.TRACE[2024-06-22 16:24:27.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:27.793][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:27.794][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.796][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.797][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.799][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.804][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.806][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:27.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.809][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.812][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:27.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:27.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.828][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-06-22 16:24:27.829][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:27.830][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-22 16:24:27.841][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:27.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:27.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.846][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:27.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:27.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:27.857][biodb::testThat]
biodb.INFO [2024-06-22 16:24:27.858][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-06-22 16:24:27.860][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:27.861][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:27.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:27.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:27.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:27.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:27.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:27.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:27.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:27.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:27.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:27.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:27.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:27.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:27.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:27.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:27.936][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:27.940][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:27.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-06-22 16:24:27.943][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:27.954][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-06-22 16:24:27.957][private$loadEntries] Creating entries from ids [1]: "171370721".
biodb.DEBUG[2024-06-22 16:24:27.958][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:24:27.960][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171370721".
biodb.TRACE[2024-06-22 16:24:27.962][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:27.974][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171370721.xml".
biodb.DEBUG[2024-06-22 16:24:27.976][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:27.978][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:24:27.979][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:27.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:27.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:27.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:27.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:27.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:27.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:27.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:27.997][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:27.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:28.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.007][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.008][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.017][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.019][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.027][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.029][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.037][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.038][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.041][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.047][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:28.049][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:28.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:28.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:28.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.057][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:28.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:28.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.063][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:28.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:28.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.068][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:28.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:28.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:28.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:28.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:28.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:28.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.083][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:28.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:28.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:28.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:28.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.093][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:28.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.100][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:28.101][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:28.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.105][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:28.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:28.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.110][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:28.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:28.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:28.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.120][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:28.121][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:28.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.124][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:28.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.130][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:28.132][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:28.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.134][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:28.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.141][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:28.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.170][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:28.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:28.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:28.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:28.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.205][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:28.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:28.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:28.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:28.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:28.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:28.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:28.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:28.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:28.272][self$createEntryFromContent] Accession numbers: 171370721.
biodb.DEBUG[2024-06-22 16:24:28.273][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:28.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:28.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:28.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:28.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:28.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:28.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:28.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:28.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.300][private$selectFields]
biodb.TRACE[2024-06-22 16:24:28.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:28.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:28.304][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.309][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.314][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.315][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.321][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:28.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.337][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-06-22 16:24:28.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:28.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:28.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:28.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:28.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:28.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:28.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.362][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.363][private$selectFields]
biodb.TRACE[2024-06-22 16:24:28.364][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:28.365][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:28.366][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.369][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.376][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.378][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.383][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.384][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:28.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.400][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-06-22 16:24:28.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:28.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:28.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:28.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:28.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:28.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:28.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:28.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.426][private$selectFields]
biodb.TRACE[2024-06-22 16:24:28.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:28.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:28.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.435][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.437][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.440][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.441][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:28.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.447][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:28.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171370721].
biodb.DEBUG[2024-06-22 16:24:28.464][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:28.465][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:28.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:28.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:28.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:28.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:28.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:28.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:28.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:28.488][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:28.492][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:28.493][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:28.495][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:28.557][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:28.558][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:28.560][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:28.562][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:28.658][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:28.661][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-06-22 16:24:28.667][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-06-22 16:24:28.671][private$loadEntries] Creating entries from ids [2]: "171341956, 171226048".
biodb.DEBUG[2024-06-22 16:24:28.673][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-22 16:24:28.675][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171341956, 171226048".
biodb.TRACE[2024-06-22 16:24:28.677][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-22 16:24:28.679][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:24:28.680][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:28.682][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:28.683][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:28.684][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:28.686][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-06-22 16:24:28.688][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048/XML".
biodb.DEBUG[2024-06-22 16:24:28.690][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:28.692][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:28.693][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048/XML".
biodb.TRACE[2024-06-22 16:24:28.826][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048/XML).
biodb.TRACE[2024-06-22 16:24:28.923][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171341956.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171226048.xml"
biodb.DEBUG[2024-06-22 16:24:28.927][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:28.929][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-22 16:24:28.931][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:28.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:28.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:28.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:28.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:28.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:28.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:28.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:28.949][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:28.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:28.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:28.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.959][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.960][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:28.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.969][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.971][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:28.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.980][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.981][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:28.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.990][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.991][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:28.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.008][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.009][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.018][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:29.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.023][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:29.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.028][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:29.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:29.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:29.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:29.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.038][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:29.039][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:29.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.041][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:29.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:29.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:29.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.052][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:29.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.058][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:29.059][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:29.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.063][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:29.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:29.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.068][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:29.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:29.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.078][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:29.079][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:29.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.082][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.088][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:29.089][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:29.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.092][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:29.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:29.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.098][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.113][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:29.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.127][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:29.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.142][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:29.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.156][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:29.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:29.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:29.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:29.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:29.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:29.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:29.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:29.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:29.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:29.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:29.225][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.235][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.236][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.239][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.245][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.246][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.255][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.257][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.259][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.266][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.267][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.276][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.277][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.286][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:29.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.291][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:29.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.296][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:29.297][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:29.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:29.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:29.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.306][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:29.307][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:29.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:29.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:29.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:29.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:29.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:29.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.326][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:29.327][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:29.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.330][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.336][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:29.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:29.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:29.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.347][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:29.348][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:29.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:29.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.357][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:29.358][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:29.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.360][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:29.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:29.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.367][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:29.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.382][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:29.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.397][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.417][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:29.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.432][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:29.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:29.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:29.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:29.515][self$createEntryFromContent] Accession numbers: 171341956, 171226048.
biodb.DEBUG[2024-06-22 16:24:29.517][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:29.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:29.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:29.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:29.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:29.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:29.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:29.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.543][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.544][private$selectFields]
biodb.TRACE[2024-06-22 16:24:29.545][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:29.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:29.547][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.550][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.553][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.558][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.559][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.564][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.565][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:29.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-22 16:24:29.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:29.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:29.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:29.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:29.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:29.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:29.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:29.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.606][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.607][private$selectFields]
biodb.TRACE[2024-06-22 16:24:29.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:29.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:29.611][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.612][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.613][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.615][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.617][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.621][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.622][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.625][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.628][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:29.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.644][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-06-22 16:24:29.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:29.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:29.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:29.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:29.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:29.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:29.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:29.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.670][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.671][private$selectFields]
biodb.TRACE[2024-06-22 16:24:29.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:29.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:29.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.681][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.684][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.685][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.686][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:29.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.692][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:29.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:29.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171226048].
biodb.DEBUG[2024-06-22 16:24:29.709][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:29.710][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-22 16:24:29.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:29.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:29.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:29.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:29.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:29.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:29.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:29.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:29.783][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:29.787][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:29.789][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-06-22 16:24:29.791][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:29.804][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-06-22 16:24:29.807][private$loadEntries] Creating entries from ids [3]: "171364948, 171326566, 171268275".
biodb.DEBUG[2024-06-22 16:24:29.808][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-22 16:24:29.810][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171364948, 171326566, 171268275".
biodb.TRACE[2024-06-22 16:24:29.812][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-06-22 16:24:29.849][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171364948.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171326566.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171268275.xml".
biodb.DEBUG[2024-06-22 16:24:29.851][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:29.853][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-22 16:24:29.854][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:29.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:29.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:29.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:29.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:29.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:29.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:29.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:29.872][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.876][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:29.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:29.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.916][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.917][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.920][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.927][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.928][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:29.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.937][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.939][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.941][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:29.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.948][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.949][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.951][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:29.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.958][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.960][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:29.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.969][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:29.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.974][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:29.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:29.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.979][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:29.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:29.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.982][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:29.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:29.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:29.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:29.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:29.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:29.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.009][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:30.010][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:30.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.014][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:30.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.019][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:30.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:30.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:30.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:30.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.030][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.031][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.040][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.041][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.050][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:30.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.065][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:30.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:30.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.094][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:30.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.109][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:30.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:30.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:30.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:30.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:30.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:30.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:30.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:30.179][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.190][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.191][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.200][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.202][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.211][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.212][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.221][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.222][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.225][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.231][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.233][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.242][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:30.243][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:30.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.247][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:30.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:30.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.252][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:30.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:30.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:30.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:30.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:30.264][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:30.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.266][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:30.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:30.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.273][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.283][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:30.285][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:30.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.287][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.294][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:30.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:30.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.297][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:30.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:30.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.304][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.305][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.315][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.316][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.376][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:30.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:30.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:30.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:30.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:30.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:30.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:30.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:30.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:30.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:30.461][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.462][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.465][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.471][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.472][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.475][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.481][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.483][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.491][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.493][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.495][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.502][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.503][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.512][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.513][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.522][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:30.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:30.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.526][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.528][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:30.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.533][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:30.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:30.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.536][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.543][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:30.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:30.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.554][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.563][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:30.565][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:30.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.568][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:30.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:30.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.573][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:30.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:30.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.577][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:30.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:30.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.584][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.585][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:30.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.594][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.595][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:30.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.648][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:30.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:30.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:30.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:30.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:30.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:30.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:30.766][self$createEntryFromContent] Accession numbers: 171364948, 171326566, 171268275.
biodb.DEBUG[2024-06-22 16:24:30.767][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:30.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:30.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:30.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:30.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:30.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:30.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:30.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.794][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.795][private$selectFields]
biodb.TRACE[2024-06-22 16:24:30.797][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:30.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:30.799][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.804][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.809][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.811][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.812][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.816][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.817][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:30.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.833][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-06-22 16:24:30.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:30.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:30.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:30.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:30.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:30.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:30.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.860][private$selectFields]
biodb.TRACE[2024-06-22 16:24:30.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:30.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:30.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.868][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.869][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.873][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.874][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.875][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.877][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.880][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.881][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326566].
biodb.DEBUG[2024-06-22 16:24:30.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:30.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:30.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:30.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:30.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:30.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:30.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.927][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.928][private$selectFields]
biodb.TRACE[2024-06-22 16:24:30.929][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:30.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:30.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.937][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.938][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.939][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.941][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.944][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:30.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.950][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:30.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171268275].
biodb.DEBUG[2024-06-22 16:24:30.968][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:30.969][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:30.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:30.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:30.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:30.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:30.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:30.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:30.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:30.991][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:30.995][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:30.996][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:30.998][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:31.051][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:31.052][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:31.054][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:31.056][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:31.145][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:31.148][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-06-22 16:24:31.154][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-06-22 16:24:31.157][private$loadEntries] Creating entries from ids [1]: "171219496".
biodb.DEBUG[2024-06-22 16:24:31.159][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:24:31.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171219496".
biodb.TRACE[2024-06-22 16:24:31.163][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-22 16:24:31.165][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:24:31.166][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:31.167][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:31.168][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:31.170][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:31.171][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-22 16:24:31.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171219496/XML".
biodb.DEBUG[2024-06-22 16:24:31.176][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:31.177][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:31.178][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171219496/XML".
biodb.TRACE[2024-06-22 16:24:31.276][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171219496/XML).
biodb.TRACE[2024-06-22 16:24:31.381][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171219496.xml"
biodb.DEBUG[2024-06-22 16:24:31.384][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:31.386][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:24:31.388][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:31.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:31.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:31.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:31.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:31.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:31.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:31.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:31.406][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:31.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:31.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:31.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:31.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.416][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:31.417][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:31.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.420][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:31.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:31.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.426][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:31.428][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:31.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.430][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:31.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.437][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:31.438][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:31.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:31.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:31.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.447][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:31.449][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:31.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.457][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:31.459][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:31.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:31.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:31.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.468][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:31.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:31.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.474][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:31.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:31.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.479][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:31.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:31.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:31.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:31.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:31.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:31.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:31.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:31.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.504][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.510][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:31.512][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:31.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.521][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:31.522][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.524][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.531][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:31.532][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:31.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:31.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:31.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.549][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:31.551][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:31.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:31.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.560][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:31.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:31.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:31.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:31.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:31.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:31.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:31.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:31.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:31.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:31.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:31.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.590][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:31.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:31.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:31.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.605][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:31.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:31.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:31.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:31.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:31.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.620][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:31.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:31.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:31.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:31.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:31.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:31.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:31.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:31.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:31.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:31.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:31.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:31.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:31.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:31.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:31.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:31.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:31.688][self$createEntryFromContent] Accession numbers: 171219496.
biodb.DEBUG[2024-06-22 16:24:31.690][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:31.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:31.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:31.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:31.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:31.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:31.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:31.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:31.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.716][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.717][private$selectFields]
biodb.TRACE[2024-06-22 16:24:31.718][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:31.719][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:31.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.727][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.733][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.734][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.738][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.739][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-22 16:24:31.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:31.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:31.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:31.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:31.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:31.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:31.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:31.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.781][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.782][private$selectFields]
biodb.TRACE[2024-06-22 16:24:31.783][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:31.784][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:31.785][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.790][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.796][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.797][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.803][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:31.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171226048].
biodb.DEBUG[2024-06-22 16:24:31.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:31.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:31.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:31.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:31.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:31.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:31.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:31.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.845][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.846][private$selectFields]
biodb.TRACE[2024-06-22 16:24:31.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:31.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:31.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.855][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.862][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:31.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.868][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:31.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:31.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171219496].
biodb.DEBUG[2024-06-22 16:24:31.886][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:31.887][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-22 16:24:31.898][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:31.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:31.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.905][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:31.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:31.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:31.918][biodb::testThat]
biodb.INFO [2024-06-22 16:24:31.919][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-06-22 16:24:31.921][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:31.922][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:31.926][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.931][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:31.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:31.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:31.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:31.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:31.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:31.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:31.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:32.009][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:32.013][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:32.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-22 16:24:32.017][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:32.019][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-22 16:24:32.021][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:32.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.049][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.050][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.051][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.052][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.058][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.060][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.063][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.064][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.067][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.070][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.087][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-22 16:24:32.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.113][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.114][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.117][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.123][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.125][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.128][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.129][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.131][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.132][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.134][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.135][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-06-22 16:24:32.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.179][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.180][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.181][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.182][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.184][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.185][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.186][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.190][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.191][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.195][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.196][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.202][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.218][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-22 16:24:32.219][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:32.220][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:32.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:32.243][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:32.247][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:32.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-22 16:24:32.251][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:32.253][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-22 16:24:32.255][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:32.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.282][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.283][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.284][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.296][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.299][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.304][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.321][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-22 16:24:32.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.348][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.356][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.358][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.359][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.362][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.364][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.365][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.366][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.370][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-22 16:24:32.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.413][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.416][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.424][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.435][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.441][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-22 16:24:32.459][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:32.460][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-22 16:24:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:32.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:32.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:32.553][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:32.557][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:32.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-22 16:24:32.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:32.563][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-22 16:24:32.565][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:32.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.592][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.596][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.597][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.598][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.601][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.602][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.607][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.608][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.613][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.614][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-22 16:24:32.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.656][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.657][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.661][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.662][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.663][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.667][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.668][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.673][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.679][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-22 16:24:32.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.721][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.723][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.725][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.731][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.732][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.735][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.736][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.737][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.740][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.743][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-06-22 16:24:32.761][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:32.762][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:32.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:32.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:32.788][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:32.790][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-22 16:24:32.792][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:32.794][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-22 16:24:32.797][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:32.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.823][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.824][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.825][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.826][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.828][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.834][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.835][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.837][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.839][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.840][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.841][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.842][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.846][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.869][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-22 16:24:32.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.895][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.897][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.898][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.899][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.907][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.909][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.915][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.916][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.922][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.939][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-06-22 16:24:32.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:32.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:32.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:32.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:32.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:32.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:32.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:32.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.964][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.965][private$selectFields]
biodb.TRACE[2024-06-22 16:24:32.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:32.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:32.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.971][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.981][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:32.982][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.987][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:32.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:32.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:32.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:32.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:33.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-06-22 16:24:33.004][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:33.006][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-22 16:24:33.034][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:33.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.039][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:33.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.049][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:33.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:33.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.053][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.055][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.056][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.058][ef$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:33.061][biodb::testThat]
biodb.INFO [2024-06-22 16:24:33.062][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-06-22 16:24:33.063][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:33.064][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:33.068][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:33.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:33.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.073][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:33.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:33.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:33.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:33.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:33.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:33.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:33.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:33.140][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:33.144][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:33.145][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:33.147][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:33.209][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:33.210][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:33.212][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:33.214][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:33.265][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:33.268][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-06-22 16:24:33.273][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-06-22 16:24:33.276][private$loadEntries] Creating entries from ids [2]: "93507146, 171393041".
biodb.DEBUG[2024-06-22 16:24:33.278][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-22 16:24:33.279][cch$loadFileContent] Trying to load 2 files from cache: [2]: "93507146, 171393041".
biodb.TRACE[2024-06-22 16:24:33.281][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-22 16:24:33.283][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:24:33.284][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:33.285][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:33.287][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:33.288][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:33.289][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-06-22 16:24:33.291][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/93507146,171393041/XML".
biodb.DEBUG[2024-06-22 16:24:33.294][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:33.295][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:33.296][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/93507146,171393041/XML".
biodb.TRACE[2024-06-22 16:24:33.393][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/93507146,171393041/XML).
biodb.TRACE[2024-06-22 16:24:33.553][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93507146.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171393041.xml"
biodb.DEBUG[2024-06-22 16:24:33.558][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:33.560][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-22 16:24:33.562][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:33.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:33.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:33.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:33.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:33.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:33.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:33.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:33.581][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:33.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:33.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.591][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.592][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.595][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.601][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.603][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.612][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.613][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.615][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.622][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.623][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.633][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.634][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.636][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.643][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:33.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:33.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.647][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.648][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:33.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.653][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:33.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:33.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:33.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:33.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:33.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:33.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:33.684][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:33.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:33.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:33.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.693][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:33.695][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:33.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.697][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:33.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.704][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:33.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.707][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:33.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.714][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:33.716][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:33.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.718][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:33.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:33.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.725][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:33.726][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:33.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:33.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:33.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.736][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:33.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.751][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:33.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.766][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:33.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.796][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:33.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:33.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:33.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:33.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:33.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:33.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:33.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:33.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:33.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:33.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:33.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:33.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:33.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:33.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:33.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:33.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:33.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:33.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:33.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:33.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:33.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:33.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:33.869][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:33.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:33.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.873][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:33.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:33.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.879][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.880][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.889][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.891][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.900][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.901][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:33.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.913][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.915][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.917][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:33.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.924][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.925][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:33.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.934][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:33.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:33.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.939][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:33.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:33.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.944][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:33.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:33.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:33.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:33.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.954][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:33.956][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:33.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:33.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:33.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:33.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:33.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.969][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.976][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:33.977][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:33.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.987][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:33.988][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:33.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:33.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:33.997][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:33.998][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:33.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:34.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:34.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.007][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:34.008][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:34.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:34.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:34.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:34.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:34.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:34.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:34.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.032][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:34.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:34.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:34.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:34.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.047][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:34.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:34.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:34.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:34.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:34.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:34.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.062][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:34.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:34.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:34.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:34.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:34.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.077][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:34.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:34.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:34.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:34.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:34.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:34.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:34.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:34.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:34.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:34.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:34.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:34.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:34.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:34.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:34.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:34.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:34.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:34.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:34.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:34.170][self$createEntryFromContent] Accession numbers: 93507146, 171393041.
biodb.DEBUG[2024-06-22 16:24:34.171][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:34.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:34.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.199][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.200][private$selectFields]
biodb.TRACE[2024-06-22 16:24:34.201][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:34.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:34.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.205][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.206][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.217][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.218][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.219][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.223][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:34.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [93507146].
biodb.DEBUG[2024-06-22 16:24:34.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:34.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.265][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.266][private$selectFields]
biodb.TRACE[2024-06-22 16:24:34.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:34.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:34.270][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.276][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.277][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.282][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.287][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.289][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:34.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171393041].
biodb.DEBUG[2024-06-22 16:24:34.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.333][private$selectFields]
biodb.TRACE[2024-06-22 16:24:34.334][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:34.335][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:34.336][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.339][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.341][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.344][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.349][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.350][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.351][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.353][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.354][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:34.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-22 16:24:34.372][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:34.373][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:34.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:34.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:34.399][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:34.400][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:34.402][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:34.461][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:34.463][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:34.464][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:34.466][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:34.510][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:34.513][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-06-22 16:24:34.518][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-06-22 16:24:34.522][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:34.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:34.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.548][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.550][private$selectFields]
biodb.TRACE[2024-06-22 16:24:34.551][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:34.552][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:34.553][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.554][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.558][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.559][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.563][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.565][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.571][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:34.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-22 16:24:34.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:34.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.616][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.617][private$selectFields]
biodb.TRACE[2024-06-22 16:24:34.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:34.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:34.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.625][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.630][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.633][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.639][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-22 16:24:34.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.688][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.689][private$selectFields]
biodb.TRACE[2024-06-22 16:24:34.690][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:34.692][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:34.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.698][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.705][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.706][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.711][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:34.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.727][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-22 16:24:34.728][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:34.729][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:34.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:34.778][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:34.782][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:34.784][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-22 16:24:34.785][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:34.788][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-22 16:24:34.790][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:34.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.816][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.817][private$selectFields]
biodb.TRACE[2024-06-22 16:24:34.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:34.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:34.821][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.822][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.827][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.828][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.833][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.834][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.835][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.837][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.839][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:34.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-22 16:24:34.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.882][private$selectFields]
biodb.TRACE[2024-06-22 16:24:34.883][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:34.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:34.885][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.895][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.896][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.897][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.898][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.903][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:34.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.922][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-06-22 16:24:34.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:34.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:34.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:34.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:34.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:34.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.949][private$selectFields]
biodb.TRACE[2024-06-22 16:24:34.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:34.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:34.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.964][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:34.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.969][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.970][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:34.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:34.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:34.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-22 16:24:34.987][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:34.988][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:34.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:34.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:34.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:35.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:35.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:35.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:35.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:35.011][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:35.014][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:35.016][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-22 16:24:35.018][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:35.020][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-22 16:24:35.022][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:35.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:35.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:35.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:35.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:35.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:35.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:35.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:35.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.049][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.050][private$selectFields]
biodb.TRACE[2024-06-22 16:24:35.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:35.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:35.053][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.058][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.063][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.064][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.065][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.071][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:35.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-22 16:24:35.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:35.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:35.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:35.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:35.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:35.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:35.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:35.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.121][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.122][private$selectFields]
biodb.TRACE[2024-06-22 16:24:35.124][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:35.125][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:35.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.132][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.133][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.137][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.138][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.140][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.141][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.144][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-22 16:24:35.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:35.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:35.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:35.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:35.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:35.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:35.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:35.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.186][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.187][private$selectFields]
biodb.TRACE[2024-06-22 16:24:35.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:35.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:35.191][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.193][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.196][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.202][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.203][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.206][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.209][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:35.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.226][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-22 16:24:35.227][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:35.228][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:35.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:35.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:35.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:35.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:35.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:35.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:35.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:35.278][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:35.281][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:35.283][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:35.285][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:35.339][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:35.340][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:35.342][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:35.344][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:35.394][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:35.397][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-06-22 16:24:35.402][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-06-22 16:24:35.406][private$loadEntries] Creating entries from ids [1]: "171380756".
biodb.DEBUG[2024-06-22 16:24:35.407][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:24:35.409][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171380756".
biodb.TRACE[2024-06-22 16:24:35.411][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-22 16:24:35.413][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:24:35.414][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:35.415][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:35.416][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:35.418][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:35.419][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-22 16:24:35.421][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380756/XML".
biodb.DEBUG[2024-06-22 16:24:35.424][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:35.425][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:35.427][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380756/XML".
biodb.TRACE[2024-06-22 16:24:35.511][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380756/XML).
biodb.TRACE[2024-06-22 16:24:35.598][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380756.xml"
biodb.DEBUG[2024-06-22 16:24:35.601][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:35.603][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:24:35.605][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:35.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:35.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:35.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:35.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:35.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:35.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:35.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:35.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:35.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:35.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.634][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:35.635][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:35.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:35.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:35.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.644][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:35.646][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:35.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:35.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.655][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:35.656][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:35.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.665][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:35.666][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:35.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.669][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:35.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:35.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.675][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:35.677][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:35.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.686][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:35.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:35.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.691][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:35.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:35.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.696][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:35.697][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:35.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:35.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:35.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:35.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:35.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:35.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:35.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:35.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:35.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:35.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:35.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.727][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:35.728][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:35.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:35.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:35.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.737][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:35.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:35.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:35.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.748][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:35.749][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:35.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.752][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:35.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:35.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.758][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:35.760][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:35.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:35.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:35.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.769][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:35.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:35.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:35.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:35.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:35.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:35.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.784][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:35.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:35.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:35.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:35.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:35.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:35.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:35.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:35.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:35.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:35.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:35.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.824][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:35.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:35.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:35.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:35.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:35.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:35.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.839][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:35.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:35.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:35.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:35.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:35.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:35.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:35.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:35.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:35.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:35.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:35.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:35.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:35.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:35.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:35.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:35.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:35.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:35.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:35.909][self$createEntryFromContent] Accession numbers: 171380756.
biodb.DEBUG[2024-06-22 16:24:35.911][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:35.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:35.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:35.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:35.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:35.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:35.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:35.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.940][private$selectFields]
biodb.TRACE[2024-06-22 16:24:35.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:35.942][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:35.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.955][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.956][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:35.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.964][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.965][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:35.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:35.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:35.983][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-22 16:24:35.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:35.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:35.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:35.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:35.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:35.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:35.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:35.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.008][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:36.009][private$selectFields]
biodb.TRACE[2024-06-22 16:24:36.011][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:36.012][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:36.013][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:36.014][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.015][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.019][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:36.025][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:36.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.031][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:36.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-22 16:24:36.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:36.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:36.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:36.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:36.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:36.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:36.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:36.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.073][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:36.075][private$selectFields]
biodb.TRACE[2024-06-22 16:24:36.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:36.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:36.078][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:36.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.083][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.089][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:36.090][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:36.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.095][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.096][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-06-22 16:24:36.114][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:36.115][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:36.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:36.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:36.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:36.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:36.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:36.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:36.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:36.137][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:36.141][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:36.142][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:36.144][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:36.197][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:36.198][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:36.200][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:36.202][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:36.365][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:36.368][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-06-22 16:24:36.373][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-06-22 16:24:36.376][private$loadEntries] Creating entries from ids [3]: "171394923, 171394084, 171394067".
biodb.DEBUG[2024-06-22 16:24:36.378][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-22 16:24:36.380][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171394923, 171394084, 171394067".
biodb.TRACE[2024-06-22 16:24:36.382][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-22 16:24:36.383][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:24:36.384][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:36.386][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:36.387][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:36.388][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:36.389][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-22 16:24:36.392][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171394923,171394084,171394067/XML".
biodb.DEBUG[2024-06-22 16:24:36.394][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:36.395][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:36.397][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171394923,171394084,171394067/XML".
biodb.TRACE[2024-06-22 16:24:36.524][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171394923,171394084,171394067/XML).
biodb.TRACE[2024-06-22 16:24:36.675][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171394923.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171394084.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171394067.xml"
biodb.DEBUG[2024-06-22 16:24:36.680][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:36.682][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-22 16:24:36.684][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:36.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:36.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:36.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:36.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:36.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:36.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:36.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:36.702][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:36.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:36.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.706][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.712][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:36.714][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:36.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.716][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:36.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:36.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.723][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:36.724][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:36.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:36.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:36.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.742][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:36.743][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:36.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.745][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:36.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.752][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:36.754][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:36.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:36.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:36.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.763][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:36.764][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:36.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.773][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:36.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:36.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:36.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:36.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.784][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:36.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:36.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:36.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:36.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:36.796][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:36.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.798][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:36.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:36.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:36.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.808][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:36.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:36.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.815][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:36.816][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:36.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.825][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:36.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:36.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:36.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.835][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:36.837][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:36.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:36.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:36.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.846][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:36.847][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:36.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:36.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:36.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:36.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:36.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:36.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:36.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:36.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:36.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:36.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:36.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:36.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:36.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.903][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:36.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:36.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:36.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:36.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:36.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.924][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:36.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:36.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:36.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:36.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:36.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:36.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:36.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:36.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:36.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:36.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:36.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:36.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:36.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:36.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:36.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:36.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:36.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:36.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:36.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:36.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:36.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:36.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:36.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:36.995][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:36.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:36.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:36.999][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.005][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.007][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.015][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.017][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.026][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.027][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.036][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.038][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.046][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.048][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.057][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:37.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:37.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.060][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.062][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:37.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:37.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.067][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:37.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:37.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:37.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:37.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.077][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:37.078][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:37.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:37.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:37.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:37.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:37.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:37.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.097][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:37.098][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:37.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.101][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.102][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:37.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:37.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.107][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:37.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:37.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.111][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:37.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:37.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.117][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:37.119][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:37.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.121][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:37.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:37.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.128][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:37.129][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:37.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:37.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:37.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:37.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.174][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:37.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.189][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:37.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.204][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:37.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:37.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:37.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:37.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:37.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:37.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:37.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:37.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:37.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:37.274][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.284][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.285][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.288][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.294][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.296][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.305][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.306][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.309][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.315][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.316][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.325][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.327][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.336][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:37.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:37.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:37.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:37.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.346][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:37.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:37.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:37.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:37.358][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:37.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.360][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:37.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:37.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:37.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:37.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.377][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:37.378][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:37.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.382][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.387][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:37.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:37.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:37.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.398][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:37.399][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:37.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.401][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.408][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:37.410][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:37.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.412][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:37.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:37.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.418][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:37.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:37.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.433][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:37.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:37.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.448][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:37.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:37.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.479][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:37.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:37.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:37.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:37.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:37.576][self$createEntryFromContent] Accession numbers: 171394923, 171394084, 171394067.
biodb.DEBUG[2024-06-22 16:24:37.577][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:37.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:37.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:37.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:37.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:37.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:37.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:37.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:37.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.611][private$selectFields]
biodb.TRACE[2024-06-22 16:24:37.612][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:37.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:37.615][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.617][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.627][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.632][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.633][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:37.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.649][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394923].
biodb.DEBUG[2024-06-22 16:24:37.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:37.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:37.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:37.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:37.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:37.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:37.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.675][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.676][private$selectFields]
biodb.TRACE[2024-06-22 16:24:37.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:37.678][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:37.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.682][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.684][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.687][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.690][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.691][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.692][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.694][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.696][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.697][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:37.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.714][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394084].
biodb.DEBUG[2024-06-22 16:24:37.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:37.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:37.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:37.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:37.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:37.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:37.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:37.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.739][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.740][private$selectFields]
biodb.TRACE[2024-06-22 16:24:37.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:37.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:37.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.755][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.756][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.762][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:37.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394067].
biodb.DEBUG[2024-06-22 16:24:37.779][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:37.781][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:37.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:37.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:37.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:37.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:37.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:37.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:37.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:37.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:37.835][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:37.836][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-06-22 16:24:37.838][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:37.841][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-06-22 16:24:37.843][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:37.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:37.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:37.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:37.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:37.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:37.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:37.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.869][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.870][private$selectFields]
biodb.TRACE[2024-06-22 16:24:37.871][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:37.872][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:37.873][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.880][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.884][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.886][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.887][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.892][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:37.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [93507146].
biodb.DEBUG[2024-06-22 16:24:37.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:37.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:37.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:37.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:37.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:37.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:37.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:37.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.934][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.935][private$selectFields]
biodb.TRACE[2024-06-22 16:24:37.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:37.938][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:37.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.940][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.941][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.950][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.951][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:37.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.957][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:37.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.974][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171393041].
biodb.DEBUG[2024-06-22 16:24:37.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:37.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:37.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:37.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:37.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:37.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:37.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:37.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:37.999][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.000][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.001][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.003][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.004][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.010][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.011][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.015][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.016][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.027][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.029][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-22 16:24:38.047][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:38.048][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:38.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:38.070][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:38.074][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:38.075][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-06-22 16:24:38.077][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:38.079][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-06-22 16:24:38.082][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:38.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.107][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.108][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.111][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.113][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.116][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.121][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.122][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.123][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.125][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.126][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.129][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-22 16:24:38.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.172][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.173][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.174][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.175][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.181][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.183][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.185][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.186][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.187][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.193][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.210][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-22 16:24:38.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.236][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.237][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.238][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.239][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.240][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.248][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.252][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.258][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.275][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-22 16:24:38.276][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:38.277][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:38.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:38.326][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:38.330][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:38.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-22 16:24:38.334][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:38.336][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-22 16:24:38.338][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:38.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.365][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.366][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.367][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.368][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.374][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.377][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.381][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.383][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.384][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.387][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.404][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-22 16:24:38.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.430][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.435][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.440][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.441][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.445][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.446][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.448][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.452][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.475][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-06-22 16:24:38.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.501][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.502][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.504][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.506][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.509][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.511][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.512][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.513][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.517][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.518][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.520][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.523][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.524][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.540][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-22 16:24:38.541][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:38.542][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:38.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:38.565][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:38.568][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:38.570][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-22 16:24:38.572][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:38.574][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-22 16:24:38.576][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:38.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.603][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.604][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.605][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.606][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.607][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.610][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.612][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.613][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.617][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.618][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.619][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.625][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-22 16:24:38.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.667][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.668][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.678][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.679][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.683][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.684][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.686][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.690][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.706][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-22 16:24:38.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.733][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.736][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.742][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.744][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.746][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.747][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.748][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.754][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.771][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-22 16:24:38.772][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:38.773][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:38.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:38.823][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:38.826][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:38.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-06-22 16:24:38.830][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:38.832][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-06-22 16:24:38.835][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:38.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.862][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.863][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.864][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.866][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.876][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.878][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.884][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-22 16:24:38.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.939][private$selectFields]
biodb.TRACE[2024-06-22 16:24:38.941][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:38.942][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:38.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.954][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.955][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:38.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.961][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:38.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:38.978][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-22 16:24:38.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:38.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:38.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:38.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:38.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:38.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:38.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.006][private$selectFields]
biodb.TRACE[2024-06-22 16:24:39.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:39.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:39.010][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.015][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.020][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.022][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.025][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.027][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.028][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:39.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-06-22 16:24:39.046][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:39.047][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:39.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:39.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:39.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:39.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:39.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:39.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:39.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:39.070][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:39.074][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:39.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-06-22 16:24:39.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:39.081][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-06-22 16:24:39.083][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:39.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:39.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:39.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:39.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:39.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:39.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:39.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:39.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.110][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.111][private$selectFields]
biodb.TRACE[2024-06-22 16:24:39.112][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:39.113][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:39.114][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.119][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.124][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.125][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.127][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.128][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.133][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:39.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.149][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394923].
biodb.DEBUG[2024-06-22 16:24:39.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:39.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:39.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:39.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:39.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:39.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:39.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:39.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.175][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.176][private$selectFields]
biodb.TRACE[2024-06-22 16:24:39.177][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:39.178][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:39.180][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.181][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.183][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.186][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.193][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.194][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.202][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:39.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.218][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394084].
biodb.DEBUG[2024-06-22 16:24:39.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:39.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:39.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:39.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:39.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:39.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:39.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:39.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.244][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.245][private$selectFields]
biodb.TRACE[2024-06-22 16:24:39.246][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:39.247][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:39.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.251][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.253][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.258][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.260][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:39.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.263][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.266][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:39.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:39.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394067].
biodb.DEBUG[2024-06-22 16:24:39.284][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:39.285][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-22 16:24:39.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:39.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:39.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:39.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:39.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:39.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:39.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:39.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:39.383][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:39.387][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:39.388][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:39.390][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:39.453][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:39.455][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:39.456][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:39.458][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:39.510][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:39.513][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-06-22 16:24:39.518][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-06-22 16:24:39.521][private$loadEntries] Creating entries from ids [2]: "171395207, 171393712".
biodb.DEBUG[2024-06-22 16:24:39.522][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-22 16:24:39.524][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171395207, 171393712".
biodb.TRACE[2024-06-22 16:24:39.526][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-22 16:24:39.528][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:24:39.529][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:39.530][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:39.532][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:39.533][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:39.534][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-06-22 16:24:39.536][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171395207,171393712/XML".
biodb.DEBUG[2024-06-22 16:24:39.539][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:39.540][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:39.542][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171395207,171393712/XML".
biodb.TRACE[2024-06-22 16:24:39.664][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171395207,171393712/XML).
biodb.TRACE[2024-06-22 16:24:39.798][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171395207.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171393712.xml"
biodb.DEBUG[2024-06-22 16:24:39.802][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:39.804][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-22 16:24:39.806][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:39.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:39.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:39.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:39.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:39.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:39.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:39.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:39.826][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:39.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:39.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:39.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:39.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.836][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:39.837][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:39.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:39.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:39.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.847][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:39.848][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:39.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:39.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:39.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.857][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:39.858][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:39.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:39.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.867][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:39.868][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:39.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:39.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:39.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.877][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:39.879][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:39.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.881][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:39.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:39.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.888][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:39.889][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.893][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:39.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.899][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:39.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:39.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.905][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:39.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:39.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:39.913][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:39.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.915][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:39.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:39.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:39.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:39.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:39.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:39.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.932][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:39.934][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:39.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.938][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:39.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:39.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.941][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:39.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.948][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:39.949][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:39.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:39.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:39.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.958][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:39.959][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:39.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:39.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.969][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:39.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:39.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:39.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:39.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:39.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:39.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:39.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:39.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:39.998][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:40.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.028][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:40.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:40.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:40.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:40.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:40.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:40.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:40.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:40.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:40.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:40.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:40.101][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.111][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:40.112][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:40.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.115][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:40.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.121][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.123][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.132][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:40.133][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:40.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.135][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.152][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.154][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.163][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.165][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.174][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:40.175][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:40.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.179][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:40.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:40.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.184][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:40.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:40.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:40.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:40.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.195][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:40.196][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:40.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.199][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:40.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:40.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:40.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:40.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:40.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.215][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:40.216][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:40.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.226][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:40.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:40.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:40.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.237][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:40.238][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:40.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:40.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:40.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.248][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:40.249][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:40.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.251][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:40.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:40.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:40.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:40.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:40.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.273][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:40.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:40.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:40.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:40.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:40.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.302][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:40.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:40.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.317][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:40.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:40.403][self$createEntryFromContent] Accession numbers: 171395207, 171393712.
biodb.DEBUG[2024-06-22 16:24:40.404][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:40.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:40.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:40.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:40.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:40.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:40.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:40.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:40.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.431][private$selectFields]
biodb.TRACE[2024-06-22 16:24:40.432][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:40.433][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:40.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.437][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.446][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.447][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.448][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.449][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.453][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:40.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [93507146].
biodb.DEBUG[2024-06-22 16:24:40.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:40.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:40.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:40.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:40.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:40.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:40.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:40.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.506][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.508][private$selectFields]
biodb.TRACE[2024-06-22 16:24:40.509][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:40.510][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:40.511][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.512][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.521][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.523][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.525][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.526][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.529][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.546][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171395207].
biodb.DEBUG[2024-06-22 16:24:40.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:40.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:40.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:40.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:40.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:40.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:40.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.572][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.574][private$selectFields]
biodb.TRACE[2024-06-22 16:24:40.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:40.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:40.577][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.580][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.589][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.590][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.592][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.594][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.595][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.597][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:40.598][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.603][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:40.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171393712].
biodb.DEBUG[2024-06-22 16:24:40.621][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:40.622][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:40.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:40.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:40.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:40.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:40.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:40.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:40.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:40.645][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:40.649][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:40.650][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:40.652][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:40.705][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:40.706][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:40.708][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:40.710][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:40.759][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:40.762][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-06-22 16:24:40.767][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-06-22 16:24:40.770][private$loadEntries] Creating entries from ids [2]: "171374855, 171374844".
biodb.DEBUG[2024-06-22 16:24:40.772][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-22 16:24:40.774][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171374855, 171374844".
biodb.TRACE[2024-06-22 16:24:40.775][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-22 16:24:40.777][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:24:40.778][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:40.779][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:40.781][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:40.782][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:40.783][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-06-22 16:24:40.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844/XML".
biodb.DEBUG[2024-06-22 16:24:40.788][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:40.789][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:40.791][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844/XML".
biodb.TRACE[2024-06-22 16:24:40.918][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844/XML).
biodb.TRACE[2024-06-22 16:24:41.011][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374855.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374844.xml"
biodb.DEBUG[2024-06-22 16:24:41.015][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:41.017][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-22 16:24:41.019][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:41.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:41.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:41.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:41.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:41.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:41.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:41.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:41.037][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.047][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.048][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.057][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.058][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.067][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.069][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.077][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.079][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.081][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.088][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.089][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.098][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:41.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:41.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.102][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:41.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:41.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.108][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:41.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:41.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:41.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.118][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:41.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:41.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:41.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:41.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:41.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:41.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.138][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:41.140][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:41.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.148][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:41.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:41.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:41.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:41.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.159][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:41.160][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:41.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:41.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.169][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:41.170][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:41.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.193][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:41.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:41.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:41.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:41.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:41.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:41.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:41.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:41.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:41.307][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.317][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.318][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.342][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.343][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.352][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.354][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.356][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.363][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.364][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.366][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.373][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.374][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.377][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.383][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:41.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:41.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.387][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.389][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:41.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:41.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.393][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:41.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:41.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.397][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:41.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:41.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:41.405][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:41.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.407][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:41.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:41.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:41.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.417][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.424][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:41.425][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:41.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.429][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:41.430][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:41.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:41.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.439][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:41.440][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:41.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:41.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.449][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:41.450][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:41.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:41.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:41.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.488][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:41.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:41.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.518][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:41.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:41.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:41.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:41.600][self$createEntryFromContent] Accession numbers: 171374855, 171374844.
biodb.DEBUG[2024-06-22 16:24:41.601][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:41.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:41.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:41.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:41.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:41.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:41.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:41.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.628][private$selectFields]
biodb.TRACE[2024-06-22 16:24:41.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:41.630][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:41.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.633][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.636][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.641][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.642][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.644][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.645][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.649][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.666][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-22 16:24:41.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:41.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:41.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:41.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:41.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:41.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:41.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:41.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.691][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.692][private$selectFields]
biodb.TRACE[2024-06-22 16:24:41.693][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:41.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:41.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.698][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.705][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.708][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.713][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.730][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374855].
biodb.DEBUG[2024-06-22 16:24:41.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:41.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:41.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:41.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:41.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:41.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:41.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:41.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.763][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.764][private$selectFields]
biodb.TRACE[2024-06-22 16:24:41.765][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:41.766][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:41.767][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.769][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.770][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.778][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.780][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.786][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:41.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.802][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374844].
biodb.DEBUG[2024-06-22 16:24:41.804][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:41.805][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:41.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:41.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:41.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:41.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:41.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:41.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:41.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:41.855][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:41.859][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:41.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-22 16:24:41.862][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:41.864][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-22 16:24:41.867][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:41.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:41.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:41.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:41.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:41.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:41.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:41.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:41.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.893][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.894][private$selectFields]
biodb.TRACE[2024-06-22 16:24:41.895][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:41.896][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:41.898][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.904][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.907][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.910][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.911][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.913][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.919][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:41.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.937][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-22 16:24:41.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:41.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:41.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:41.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:41.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:41.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:41.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:41.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.964][private$selectFields]
biodb.TRACE[2024-06-22 16:24:41.965][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:41.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:41.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.974][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.975][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.980][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:41.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.986][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:41.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:41.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:41.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-22 16:24:42.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:42.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:42.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:42.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:42.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:42.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:42.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:42.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.030][private$selectFields]
biodb.TRACE[2024-06-22 16:24:42.031][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:42.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:42.034][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.045][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.046][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.047][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.049][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.052][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:42.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.070][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-06-22 16:24:42.071][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:42.072][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:42.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:42.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:42.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:42.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:42.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:42.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:42.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:42.095][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:42.099][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:42.101][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-22 16:24:42.102][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:42.105][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-22 16:24:42.107][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:42.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:42.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:42.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:42.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:42.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:42.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:42.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.133][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.134][private$selectFields]
biodb.TRACE[2024-06-22 16:24:42.135][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:42.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:42.138][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.145][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.150][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.154][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.156][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:42.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-22 16:24:42.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:42.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:42.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:42.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:42.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:42.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:42.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:42.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.205][private$selectFields]
biodb.TRACE[2024-06-22 16:24:42.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:42.208][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:42.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.216][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.221][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.224][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.227][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:42.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.244][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-06-22 16:24:42.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:42.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:42.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:42.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:42.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:42.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:42.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:42.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.269][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.270][private$selectFields]
biodb.TRACE[2024-06-22 16:24:42.272][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:42.273][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:42.274][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.275][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.280][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.285][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.286][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:42.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.292][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:42.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-06-22 16:24:42.313][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:42.315][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:42.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:42.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:42.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:42.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:42.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:42.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:42.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:42.363][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:42.367][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:42.368][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:42.371][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:42.426][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:42.427][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:42.429][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:42.431][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:42.591][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:42.594][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-06-22 16:24:42.600][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-06-22 16:24:42.604][private$loadEntries] Creating entries from ids [1]: "171380739".
biodb.DEBUG[2024-06-22 16:24:42.606][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:24:42.608][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171380739".
biodb.TRACE[2024-06-22 16:24:42.610][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-22 16:24:42.611][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-22 16:24:42.613][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:24:42.614][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:24:42.615][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-22 16:24:42.616][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-22 16:24:42.618][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-22 16:24:42.620][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380739/XML".
biodb.DEBUG[2024-06-22 16:24:42.623][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:42.624][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:42.626][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380739/XML".
biodb.TRACE[2024-06-22 16:24:42.701][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380739/XML).
biodb.TRACE[2024-06-22 16:24:42.870][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380739.xml"
biodb.DEBUG[2024-06-22 16:24:42.874][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-22 16:24:42.875][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:24:42.877][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-22 16:24:42.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:42.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:42.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:42.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:42.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:42.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:42.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:42.897][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:42.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:42.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:42.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.910][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:42.912][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:42.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.921][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:42.922][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:42.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.925][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:42.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:42.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.931][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:42.932][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:42.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:42.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:42.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.942][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:42.943][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:42.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.946][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.952][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:42.954][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:42.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:42.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:42.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.963][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:42.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:42.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-22 16:24:42.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:42.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.973][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:42.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:42.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:42.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:42.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:42.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:42.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:42.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:42.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:42.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:42.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:42.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:43.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:43.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.004][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:43.005][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:43.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.009][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:43.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:43.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.014][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:43.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:43.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-22 16:24:43.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:43.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.025][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:43.026][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:43.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:43.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:43.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.035][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:43.036][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:43.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:43.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-22 16:24:43.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:43.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:43.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:43.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:43.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:43.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.062][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-22 16:24:43.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:43.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:43.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:43.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-22 16:24:43.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:43.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:43.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:43.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:43.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.095][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-22 16:24:43.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:43.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:43.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:43.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:43.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.120][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-22 16:24:43.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:43.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:43.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:43.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:43.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:43.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:43.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:43.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:43.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:43.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:43.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:43.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:43.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:43.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:43.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:43.192][self$createEntryFromContent] Accession numbers: 171380739.
biodb.DEBUG[2024-06-22 16:24:43.193][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:43.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:43.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.222][private$selectFields]
biodb.TRACE[2024-06-22 16:24:43.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:43.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:43.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.231][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.232][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.236][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.237][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.238][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.240][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.244][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.245][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-22 16:24:43.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.288][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.289][private$selectFields]
biodb.TRACE[2024-06-22 16:24:43.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:43.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:43.292][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.299][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.304][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.305][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.307][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.308][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.312][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:43.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-06-22 16:24:43.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:43.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.355][private$selectFields]
biodb.TRACE[2024-06-22 16:24:43.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:43.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:43.358][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.365][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.366][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.371][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.375][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.378][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.394][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-06-22 16:24:43.395][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:43.396][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:43.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:43.419][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:43.423][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-22 16:24:43.424][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-22 16:24:43.426][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-22 16:24:43.492][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-22 16:24:43.493][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-22 16:24:43.495][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-22 16:24:43.497][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-22 16:24:43.554][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-22 16:24:43.557][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-06-22 16:24:43.563][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-06-22 16:24:43.567][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:43.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.594][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.595][private$selectFields]
biodb.TRACE[2024-06-22 16:24:43.597][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:43.598][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:43.599][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.602][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.604][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.605][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.609][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.611][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.613][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.614][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.618][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:43.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394923].
biodb.DEBUG[2024-06-22 16:24:43.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.661][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.662][private$selectFields]
biodb.TRACE[2024-06-22 16:24:43.663][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:43.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:43.673][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.681][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.684][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.685][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.687][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.692][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.693][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.710][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394084].
biodb.DEBUG[2024-06-22 16:24:43.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:43.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.737][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.738][private$selectFields]
biodb.TRACE[2024-06-22 16:24:43.739][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:43.740][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:43.742][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.743][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.744][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.746][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.748][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.749][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.751][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.754][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.760][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:43.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394067].
biodb.DEBUG[2024-06-22 16:24:43.778][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:43.779][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:43.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:43.830][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:43.834][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:43.836][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-06-22 16:24:43.838][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:43.840][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-06-22 16:24:43.843][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:43.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:43.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.874][private$selectFields]
biodb.TRACE[2024-06-22 16:24:43.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:43.876][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:43.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.878][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.887][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.888][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.890][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.895][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.896][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:43.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [93507146].
biodb.DEBUG[2024-06-22 16:24:43.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:43.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.944][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.945][private$selectFields]
biodb.TRACE[2024-06-22 16:24:43.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:43.947][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:43.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.959][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.960][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.961][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:43.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.967][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:43.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:43.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:43.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:43.983][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171395207].
biodb.DEBUG[2024-06-22 16:24:43.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:43.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:43.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:43.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:43.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:43.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:43.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.009][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.010][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.021][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.024][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.025][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.026][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.029][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.032][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171393712].
biodb.DEBUG[2024-06-22 16:24:44.052][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:44.054][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:44.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:44.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:44.081][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:44.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-06-22 16:24:44.084][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:44.087][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-06-22 16:24:44.089][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:44.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.117][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.118][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.119][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.120][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.138][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.139][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.140][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.141][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.146][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-22 16:24:44.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.190][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.192][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.195][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.201][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.203][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.206][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.207][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.212][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.213][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.230][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374855].
biodb.DEBUG[2024-06-22 16:24:44.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.257][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.263][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.273][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.274][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.275][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.278][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.281][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.286][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374844].
biodb.DEBUG[2024-06-22 16:24:44.304][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:44.305][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:44.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:44.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:44.359][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:44.361][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-22 16:24:44.363][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:44.365][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-22 16:24:44.367][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:44.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.394][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.395][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.399][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.400][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.401][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.404][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.405][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.410][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.411][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.412][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.417][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.433][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-22 16:24:44.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.460][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.461][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.467][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.469][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.471][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.474][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.476][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.482][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-22 16:24:44.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.526][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.527][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.529][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.530][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.541][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.542][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.543][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.544][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.547][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.548][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.564][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-06-22 16:24:44.566][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:44.567][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:44.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:44.598][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:44.601][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:44.603][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-22 16:24:44.605][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:44.608][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-22 16:24:44.610][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:44.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.638][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.642][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.643][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.647][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.648][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.649][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.652][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.653][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.654][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.655][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.660][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-22 16:24:44.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.705][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.713][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.718][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.721][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.726][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.727][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.743][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-06-22 16:24:44.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.770][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.771][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.774][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.775][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.780][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.785][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.786][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.787][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.793][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.809][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-06-22 16:24:44.811][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:44.812][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:44.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:44.862][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:44.866][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:44.868][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-06-22 16:24:44.869][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:44.872][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-06-22 16:24:44.874][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:44.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.901][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.903][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.904][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.906][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.915][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.917][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.924][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.926][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.928][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.933][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-22 16:24:44.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:44.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:44.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:44.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:44.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:44.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:44.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:44.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.976][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.977][private$selectFields]
biodb.TRACE[2024-06-22 16:24:44.978][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:44.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:44.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.982][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.988][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.992][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.993][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:44.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.995][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:44.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:44.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:44.999][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:45.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-06-22 16:24:45.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:45.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:45.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:45.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:45.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:45.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:45.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.049][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.050][private$selectFields]
biodb.TRACE[2024-06-22 16:24:45.052][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:45.053][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:45.054][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.057][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.059][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.060][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.066][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.067][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.073][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-06-22 16:24:45.091][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:45.093][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:45.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:45.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:45.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:45.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:45.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:45.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:45.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:45.115][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:45.119][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:45.121][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-06-22 16:24:45.122][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:45.125][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-06-22 16:24:45.127][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:45.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:45.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:45.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:45.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:45.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:45.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:45.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:45.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.154][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.155][private$selectFields]
biodb.TRACE[2024-06-22 16:24:45.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:45.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:45.159][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.169][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.171][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.176][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.177][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:45.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.194][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394923].
biodb.DEBUG[2024-06-22 16:24:45.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:45.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:45.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:45.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:45.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:45.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:45.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:45.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.222][private$selectFields]
biodb.TRACE[2024-06-22 16:24:45.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:45.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:45.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.233][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.236][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.238][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.241][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.243][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.244][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:45.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394084].
biodb.DEBUG[2024-06-22 16:24:45.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:45.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:45.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:45.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:45.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:45.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:45.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.288][private$selectFields]
biodb.TRACE[2024-06-22 16:24:45.289][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:45.290][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:45.292][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.296][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.298][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.299][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.304][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.305][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-22 16:24:45.306][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.308][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.311][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-22 16:24:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394067].
biodb.DEBUG[2024-06-22 16:24:45.329][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:45.330][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-22 16:24:45.357][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.363][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:45.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:24:45.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:24:45.374][biodb::testThat]
biodb.INFO [2024-06-22 16:24:45.375][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-06-22 16:24:45.377][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:24:45.378][biodb::testThat]
biodb.TRACE[2024-06-22 16:24:45.382][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:45.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:45.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.387][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-22 16:24:45.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-22 16:24:45.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:45.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:45.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:45.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:45.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:45.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:45.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:45.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:45.456][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:45.459][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:45.461][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-22 16:24:45.463][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:45.465][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-22 16:24:45.467][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:45.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:45.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:45.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:45.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:45.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:45.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:45.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:45.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:45.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:45.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:45.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:45.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:45.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:45.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:45.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:45.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:45.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:45.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:45.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:45.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:45.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:45.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:45.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:45.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.582][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:45.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:45.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.587][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:45.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:45.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:45.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:45.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:45.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:45.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:45.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:45.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:45.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:45.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:45.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:45.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:45.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:45.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:45.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.652][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:45.653][private$selectFields]
biodb.TRACE[2024-06-22 16:24:45.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:45.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:45.657][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:45.658][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:45.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:45.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.663][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.664][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.667][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.668][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.669][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.671][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.673][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.674][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.678][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.679][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.683][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.684][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.687][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:45.689][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:45.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:45.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:45.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.696][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.697][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:45.698][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:45.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.702][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:45.703][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:45.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.706][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.707][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:45.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:45.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.716][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:45.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:45.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.726][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:45.728][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:45.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.731][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:45.732][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:45.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.735][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.736][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:45.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:45.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.740][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.741][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.742][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.746][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.747][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.751][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.752][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.754][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.755][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.757][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.760][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.762][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.764][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.765][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:45.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:45.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:45.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:45.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.774][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.775][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:45.776][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:45.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.780][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:45.781][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:45.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.785][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.789][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:45.791][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.794][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:45.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:45.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.798][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.804][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:45.805][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:45.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.808][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.809][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:45.810][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:45.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.814][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:45.815][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:45.816][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:45.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:45.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.821][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.823][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.826][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.827][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.831][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.832][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.834][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.836][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.837][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.841][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.842][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.845][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:45.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:45.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:45.852][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:45.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:45.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:45.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.860][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:45.861][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:45.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.864][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:45.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:45.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:45.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.875][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:45.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:45.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.880][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:45.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.885][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:45.886][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:45.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.890][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:45.891][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:45.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.899][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.901][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:45.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:45.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:45.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:45.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:45.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:45.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:45.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:45.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:45.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:45.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:45.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:45.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:45.998][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:45.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.053][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.155][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171384817, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, 2-methyl-4-(7H-purin-6-yl)-2-buten-1-ol, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, ...].
biodb.DEBUG[2024-06-22 16:24:46.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:46.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:46.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:46.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:46.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:46.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:46.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:46.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.258][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.262][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.336][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:46.337][private$selectFields]
biodb.TRACE[2024-06-22 16:24:46.338][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:46.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:46.340][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:46.342][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:46.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:46.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.346][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.348][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.351][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.353][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.355][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.356][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.357][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.360][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.361][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.362][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.367][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.369][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.371][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.374][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.377][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.385][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.386][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.390][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.399][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.407][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.408][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.410][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.412][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.413][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.415][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.417][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.418][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:46.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:46.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.423][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.424][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.428][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.429][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.432][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.434][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.437][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.438][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.442][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.443][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.447][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.452][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.453][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.455][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.456][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.458][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.461][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.462][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.465][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.466][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.469][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.470][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.474][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.475][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.479][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.480][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.484][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.485][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.486][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.488][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.490][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.491][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.494][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:46.496][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:46.497][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:46.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:46.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.500][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.502][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.503][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.506][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.508][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.511][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.512][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.516][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.517][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.520][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.521][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.522][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.524][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.525][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.529][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.535][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.536][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.540][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.541][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.543][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.544][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.548][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.549][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.554][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.555][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.559][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.563][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.564][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.568][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.569][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.571][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.573][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:46.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:46.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:46.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:46.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.718][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.724][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171380427, 2-(octanoyl(15N)amino)acetic acid, 2-(1-oxooctyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)(1,2-13C2)ethanoic acid, ...].
biodb.DEBUG[2024-06-22 16:24:46.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:46.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:46.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:46.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:46.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:46.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:46.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:46.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:46.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:46.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:46.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.929][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.934][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:46.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:46.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:46.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:46.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:46.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:46.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:46.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:46.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:46.997][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:46.998][private$selectFields]
biodb.TRACE[2024-06-22 16:24:46.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:47.001][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:47.002][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:47.003][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.007][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.008][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.009][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.013][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.014][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.017][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.019][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.022][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.023][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.027][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.028][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.032][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.035][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.038][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.041][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.042][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.046][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.047][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.049][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.050][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.052][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.059][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.060][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.065][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.066][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.069][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.071][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.073][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.074][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.075][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.079][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.083][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.084][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.085][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.089][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.090][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.093][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.094][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.095][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.099][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.100][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.102][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.103][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.105][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.108][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.129][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.130][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.132][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.134][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.135][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.140][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.141][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.144][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.145][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.146][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.149][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.150][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.151][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.153][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.155][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.156][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.158][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.159][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.161][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.164][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:47.166][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:47.167][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.168][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.172][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.173][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.177][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.178][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.181][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.183][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.185][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.186][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.187][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.190][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.191][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.192][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.194][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.196][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.199][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.210][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.211][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.214][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.221][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.224][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.229][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.234][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.235][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.239][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.240][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.243][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:47.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.383][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.388][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-06-22 16:24:47.490][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:47.491][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:47.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:47.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:47.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:47.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:47.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:47.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:47.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:47.515][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:47.525][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:47.527][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-22 16:24:47.529][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:47.532][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-22 16:24:47.534][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:47.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:47.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:47.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:47.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:47.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:47.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:47.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:47.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.640][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.645][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.708][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:47.711][private$selectFields]
biodb.TRACE[2024-06-22 16:24:47.712][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:47.713][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:47.715][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:47.716][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.721][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.722][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.724][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.726][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.727][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.730][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.732][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.735][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.737][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.739][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.740][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.741][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.745][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.750][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.756][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.759][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.760][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.764][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.769][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.770][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.774][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.779][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.782][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.783][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.785][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.788][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.789][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.793][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.797][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.798][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.799][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.801][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.803][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.804][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.806][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.807][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.809][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.812][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.814][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.816][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.817][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.818][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.821][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.822][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.836][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.837][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.841][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.846][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.851][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.860][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.861][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.864][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.865][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.866][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.868][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.870][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:47.871][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:47.872][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.876][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.877][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.878][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.880][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.882][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.883][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.886][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.888][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:47.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.891][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.893][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:47.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.895][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.896][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.898][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:47.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.902][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:47.903][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:47.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:47.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:47.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.912][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:47.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.917][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:47.918][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:47.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.922][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:47.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:47.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.939][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:47.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:47.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.943][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:47.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.950][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.951][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:47.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.955][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.956][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:47.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.960][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:47.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:47.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:47.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:47.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:47.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:47.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:47.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.099][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.104][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.214][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385155, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-3-fluoro-4-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-4-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-4-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-3-fluoranyl-4-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-22 16:24:48.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:48.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:48.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:48.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:48.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:48.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:48.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:48.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:48.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:48.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.402][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:48.403][private$selectFields]
biodb.TRACE[2024-06-22 16:24:48.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:48.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:48.406][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:48.408][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:48.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:48.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.411][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.413][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.414][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.417][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.419][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.422][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.424][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.428][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.430][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.433][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.434][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.438][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.443][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.444][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.452][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.454][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.456][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.457][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.466][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.467][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.468][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.470][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.476][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.477][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.478][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.482][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.484][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.486][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.487][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:48.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:48.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.492][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.494][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.497][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.498][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.501][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.502][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.503][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.506][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.507][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.508][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.511][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.512][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.513][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.517][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.520][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.525][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.528][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.530][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.531][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.533][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.536][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.538][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.541][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.546][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.550][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.555][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.556][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.557][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.561][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.562][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.564][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.566][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:48.567][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:48.568][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:48.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:48.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.572][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.573][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.574][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.577][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.578][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.579][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.581][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.582][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.584][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.587][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.589][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.591][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.592][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.593][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.597][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.601][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.602][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.603][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.610][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.611][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.612][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.615][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.616][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.625][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.629][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.634][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.635][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.636][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.640][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.641][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.643][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.645][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:48.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:48.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:48.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:48.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:48.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.803][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:48.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:48.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:48.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:48.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:48.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:48.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:48.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:48.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385152, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-3-fluoro-5-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-5-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-5-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-3-fluoranyl-5-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-22 16:24:48.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:48.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:48.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:48.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:48.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:48.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:48.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:48.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:48.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:48.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:48.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:48.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:48.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:48.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:48.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:48.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:48.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:48.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:48.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.017][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.021][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.085][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:49.087][private$selectFields]
biodb.TRACE[2024-06-22 16:24:49.088][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:49.089][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:49.090][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:49.091][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:49.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:49.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.095][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.096][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.098][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.100][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.101][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.104][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.108][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.110][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.113][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.115][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.118][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.119][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.123][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:49.124][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:49.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.138][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.139][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.142][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.152][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.161][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.162][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.163][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.166][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.167][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.168][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.170][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.172][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:49.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:49.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.176][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.178][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.181][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.182][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.193][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.194][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.198][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.200][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.203][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.205][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.209][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:49.211][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:49.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.224][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.225][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.229][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.239][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.243][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.245][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.248][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.249][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.250][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.253][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.254][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.255][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.258][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.259][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:49.260][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:49.261][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:49.263][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:49.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.266][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.267][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.271][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.272][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.276][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.277][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.280][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.282][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.285][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.286][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.290][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:49.291][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:49.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.304][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.306][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.309][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.319][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.324][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.329][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.330][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.333][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.335][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.338][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:49.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:49.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:49.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:49.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:49.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.480][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.485][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385150, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-4-fluoro-3-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-4-fluoro-3-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-4-fluoro-3-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-4-fluoranyl-3-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-22 16:24:49.591][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:49.593][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:49.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:49.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:49.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:49.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:49.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:49.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:49.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:49.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:49.636][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:49.637][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-22 16:24:49.639][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:49.642][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-22 16:24:49.644][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:49.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:49.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:49.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:49.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:49.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:49.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:49.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:49.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:49.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:49.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:49.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:49.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:49.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:49.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.751][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.756][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:49.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:49.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.825][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.830][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:49.831][private$selectFields]
biodb.TRACE[2024-06-22 16:24:49.832][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:49.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:49.835][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:49.836][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:49.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:49.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.841][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.842][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.846][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.847][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.851][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.852][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.855][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.857][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.860][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.862][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.864][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.865][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:49.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:49.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.880][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.881][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.884][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.886][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.889][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.894][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.896][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.901][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.905][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.906][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.908][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.912][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.913][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.917][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:49.918][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:49.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.920][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.922][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:49.923][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:49.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.925][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.927][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.928][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:49.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.931][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.932][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.933][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:49.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.937][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.938][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:49.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.943][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.945][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:49.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.948][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.949][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:49.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.953][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:49.954][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:49.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.958][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:49.959][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:49.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.963][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.964][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:49.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.967][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:49.969][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:49.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:49.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.976][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:49.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.982][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:49.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:49.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.988][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:49.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.991][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.993][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:49.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:49.995][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:49.996][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.997][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:49.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.001][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:50.002][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:50.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.006][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:50.007][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:50.008][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.013][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.014][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.024][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.026][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.027][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.031][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.033][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.035][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.037][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.038][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.041][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.043][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.046][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.066][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.067][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.071][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.075][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.076][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.077][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.081][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:50.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:50.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.091][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.092][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.094][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.095][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.097][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.099][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.100][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.238][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.243][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.248][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:50.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:50.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171384817, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, 2-methyl-4-(7H-purin-6-yl)-2-buten-1-ol, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, ...].
biodb.DEBUG[2024-06-22 16:24:50.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:50.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:50.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:50.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:50.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:50.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:50.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:50.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.469][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:50.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:50.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:50.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:50.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:50.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:50.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.546][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:50.547][private$selectFields]
biodb.TRACE[2024-06-22 16:24:50.548][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:50.549][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:50.551][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:50.552][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.557][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.558][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.562][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.563][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.565][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.566][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.568][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.571][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.572][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.575][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.576][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.577][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.581][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.589][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.595][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.596][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.604][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.609][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:50.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:50.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.613][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.619][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.620][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.622][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.624][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.625][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.628][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:50.630][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:50.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.632][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.633][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.638][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.639][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.641][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.643][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.644][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.647][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.649][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.651][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.652][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.653][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.656][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.657][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.658][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.662][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.665][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.676][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.677][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.681][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.682][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.684][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.685][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.690][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:50.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:50.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.698][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.700][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.701][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.704][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.706][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.709][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:50.710][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:50.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.713][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.714][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:50.715][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:50.716][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.721][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.722][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.726][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.727][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.730][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.732][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.735][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.736][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.739][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.740][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.741][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.743][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.745][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.759][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.760][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.764][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.770][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.773][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:50.774][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:50.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.778][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:50.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.781][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.783][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.784][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:50.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.787][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.789][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:50.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.792][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:50.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:50.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:50.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:50.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:50.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:50.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:50.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:50.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:50.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:50.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:50.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:50.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:50.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.955][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.959][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.964][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:50.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:50.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:50.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:50.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.038][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.065][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171380427, 2-(octanoyl(15N)amino)acetic acid, 2-(1-oxooctyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)(1,2-13C2)ethanoic acid, ...].
biodb.DEBUG[2024-06-22 16:24:51.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:51.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:51.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:51.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:51.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:51.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:51.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:51.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:51.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:51.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:51.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:51.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:51.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.169][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:51.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:51.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.174][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:51.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.247][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:51.249][private$selectFields]
biodb.TRACE[2024-06-22 16:24:51.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:51.251][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:51.252][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:51.253][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.258][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.259][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.269][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.271][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.275][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.276][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.280][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.281][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.285][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.286][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.288][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.289][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:51.291][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:51.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.294][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:51.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:51.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.304][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:51.305][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:51.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.309][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.319][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.328][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.330][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.333][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.334][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.338][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.339][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.341][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.342][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.347][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.348][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.352][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.353][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.356][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.357][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.358][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.360][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.362][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.363][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.368][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.371][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:51.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:51.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.375][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.376][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:51.377][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:51.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.385][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:51.387][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:51.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.389][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.390][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.400][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.409][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.410][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.413][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.414][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.415][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.417][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.419][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.420][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.423][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:51.425][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:51.426][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.427][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.429][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.431][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.432][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.435][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.437][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.440][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.442][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.445][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.446][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.450][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.451][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.455][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:51.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:51.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.459][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:51.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:51.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.463][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.468][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.469][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:51.470][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:51.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.474][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.483][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.487][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.493][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.494][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.497][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.499][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.501][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.502][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:51.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:51.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:51.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:51.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:51.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:51.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:51.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:51.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:51.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:51.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.641][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:51.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:51.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.645][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:51.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:51.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-06-22 16:24:51.755][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:51.756][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:51.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:51.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:51.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:51.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:51.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:51.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:51.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:51.780][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:51.784][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:51.786][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-22 16:24:51.787][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:51.790][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-22 16:24:51.792][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:51.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:51.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:51.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:51.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:51.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:51.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:51.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:51.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:51.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:51.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:51.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:51.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:51.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:51.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:51.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:51.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.895][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.900][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:51.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:51.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:51.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:51.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:51.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:51.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.971][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:51.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.976][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:51.977][private$selectFields]
biodb.TRACE[2024-06-22 16:24:51.979][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:51.980][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:51.981][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:51.982][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:51.983][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:51.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.987][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.988][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:51.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.992][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.993][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:51.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:51.995][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:51.996][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.998][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:51.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.001][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.002][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.006][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.007][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.011][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.015][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.017][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.020][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.021][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.024][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.025][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.026][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.030][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.034][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.039][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.044][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.049][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.050][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.052][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.053][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.055][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.058][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.060][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.063][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.064][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.067][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.068][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.069][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.072][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.081][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.085][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.086][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.090][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.091][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.094][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.095][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.097][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.099][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.100][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.107][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.115][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.116][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.119][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.120][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.125][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.126][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.130][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.133][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.136][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.138][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.139][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.141][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.144][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.145][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.149][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.150][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.154][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:52.155][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:52.156][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.161][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.162][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.166][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.167][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.169][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.170][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.172][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.174][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.175][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.176][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.180][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.181][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.185][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.198][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.199][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.200][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.203][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.204][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.207][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.209][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.210][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.212][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.213][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.218][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.219][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.223][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.224][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.228][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.229][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.231][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.233][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:52.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.367][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.371][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385155, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-3-fluoro-4-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-4-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-4-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-3-fluoranyl-4-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-22 16:24:52.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:52.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:52.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:52.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:52.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:52.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:52.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:52.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.595][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.658][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.663][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.668][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:52.669][private$selectFields]
biodb.TRACE[2024-06-22 16:24:52.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:52.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:52.672][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:52.674][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.678][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.680][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.683][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.684][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.688][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.689][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.692][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.693][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.694][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.696][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.698][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.699][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.702][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.706][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.712][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.713][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.716][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.718][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.721][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.731][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.732][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.737][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.739][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.740][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.741][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.745][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.746][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.750][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.751][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.754][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.759][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.760][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.764][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.765][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.769][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.770][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.773][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.775][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.778][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.779][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.782][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.783][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.797][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.798][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.800][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.802][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.806][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.810][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.811][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.821][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.822][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.825][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.827][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.830][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.831][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:52.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.834][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.835][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:52.836][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:52.837][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.841][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.842][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.843][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.846][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.847][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.848][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.852][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.853][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.855][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.856][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.858][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.861][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.862][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.866][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:52.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:52.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.871][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:52.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:52.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:52.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.880][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:52.888][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:52.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.892][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:52.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:52.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.902][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:52.903][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:52.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:52.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.912][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.914][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:52.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.917][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.919][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:52.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.922][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:52.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:52.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:52.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:52.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:52.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:52.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.012][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.056][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.061][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.066][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.155][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385152, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-3-fluoro-5-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-5-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-5-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-3-fluoranyl-5-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-22 16:24:53.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:53.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:53.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:53.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:53.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:53.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:53.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:53.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:53.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:53.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.270][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.275][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:53.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:53.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.351][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:53.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.356][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:53.357][private$selectFields]
biodb.TRACE[2024-06-22 16:24:53.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:53.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:53.361][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:53.362][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:53.363][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:53.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.367][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.368][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.371][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.373][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.375][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.376][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.377][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.380][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.381][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.382][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.386][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.387][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.389][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.390][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.395][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.396][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.399][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.405][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.406][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.413][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.414][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.415][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.419][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.420][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.428][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.430][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.433][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.434][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.438][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:53.439][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:53.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.443][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:53.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:53.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.447][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.449][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.452][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.454][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.456][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.457][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.458][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.462][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.463][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.466][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.467][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.468][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.470][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.472][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.475][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.476][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.486][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.487][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.489][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.491][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.494][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.499][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.500][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.501][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.504][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.509][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.510][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.511][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.513][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.515][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.516][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.518][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.519][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:53.521][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:53.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.523][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.524][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:53.525][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:53.526][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:53.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:53.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.530][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.531][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.533][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.536][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.537][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.541][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.542][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.546][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.547][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.550][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.552][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.554][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.555][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.559][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.563][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.569][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.570][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.574][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.577][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.579][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.580][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.583][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.585][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.592][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.593][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.594][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.598][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.599][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.601][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.602][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:53.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:53.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:53.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:53.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:53.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:53.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:53.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:53.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:53.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:53.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.745][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.749][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.754][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:53.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:53.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:53.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:53.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:53.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:53.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.858][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385150, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-4-fluoro-3-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-4-fluoro-3-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-4-fluoro-3-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-4-fluoranyl-3-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-22 16:24:53.860][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:53.861][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-22 16:24:53.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:53.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:24:53.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:53.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:53.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:53.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:53.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:53.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:53.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:53.933][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:53.937][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:53.939][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-22 16:24:53.940][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:53.943][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-22 16:24:53.945][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:53.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:53.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:53.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:53.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:53.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:53.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:53.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:53.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:53.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:53.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:53.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.054][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.125][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:54.126][private$selectFields]
biodb.TRACE[2024-06-22 16:24:54.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:54.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:54.130][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:54.131][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.132][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.135][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.136][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.137][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.141][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.142][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.144][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.145][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.147][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.149][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.150][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.152][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.154][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.155][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.157][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.159][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.160][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.166][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.168][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.173][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.174][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.176][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.179][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.184][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.187][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.188][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.193][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.194][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.198][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.199][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.203][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.204][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.207][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.209][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.211][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.212][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.213][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.217][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.218][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.222][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.223][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.225][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.226][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.228][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.231][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.232][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.236][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.240][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.244][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.250][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.251][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.255][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.259][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.265][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.268][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.273][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.274][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.276][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.279][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.280][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.284][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:54.285][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:54.286][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.290][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.291][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.292][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.296][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.297][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.301][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.302][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.304][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.305][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.307][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.309][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.310][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.311][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.314][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.315][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.329][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.330][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.333][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.334][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.335][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.340][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.342][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.343][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.347][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.349][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.353][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.354][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.356][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.357][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.359][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.362][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:54.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.508][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [130032437, 3,7-diethyl-2-methyl-benzofuran-4-ol, 3,7-diethyl-2-methyl-4-benzofuranol, 3,7-diethyl-2-methyl-1-benzofuran-4-ol, 3,7-diethyl-2-methyl-1-benzofuran-4-ol, ...].
biodb.DEBUG[2024-06-22 16:24:54.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:54.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:54.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:54.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:54.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:54.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:54.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.789][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:54.790][private$selectFields]
biodb.TRACE[2024-06-22 16:24:54.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:54.793][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:54.794][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:54.795][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.799][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.800][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.801][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.805][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.806][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.808][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.809][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.811][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.814][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.815][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.818][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.819][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.820][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.822][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.824][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.827][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.829][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.837][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.838][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.839][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.841][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.842][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.846][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.847][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.848][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.851][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.852][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.861][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.863][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.866][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.867][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.871][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.876][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.877][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.881][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.882][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.884][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.885][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.887][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.889][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.890][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.891][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.894][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.895][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.896][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.900][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.922][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:54.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.925][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:54.927][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:54.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.930][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:54.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.934][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:54.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.939][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.940][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:54.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:54.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:54.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.950][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.951][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:54.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.954][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.956][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:54.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.959][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:54.961][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:54.962][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:54.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:54.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.967][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.968][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:54.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.972][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.973][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:54.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.976][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.978][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:54.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.981][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.982][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:54.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.986][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.987][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:54.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.989][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.990][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:54.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:54.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.994][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:54.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:54.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:54.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:54.999][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.005][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.006][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.009][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.019][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.025][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.027][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.028][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.030][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.033][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.034][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.037][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.038][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.128][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.172][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.177][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-06-22 16:24:55.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:55.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:55.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:55.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:55.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:55.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:55.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:55.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.394][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.463][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:55.464][private$selectFields]
biodb.TRACE[2024-06-22 16:24:55.465][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:55.466][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:55.468][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:55.469][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.474][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.475][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.479][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.480][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.483][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.485][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.487][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.488][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.490][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.492][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.493][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.494][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.497][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.498][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.501][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.506][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.507][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.511][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.512][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.513][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.517][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.520][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.525][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.526][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.528][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.530][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.536][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.537][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.541][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.542][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.545][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.550][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.551][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.554][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.555][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.556][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.558][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.560][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.561][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.563][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.564][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.566][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.569][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.570][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.574][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.577][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.583][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.588][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.589][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.592][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.593][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.601][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.602][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.611][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.612][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.613][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.615][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.617][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.618][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.621][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:55.623][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:55.624][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.628][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.630][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.632][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.633][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.634][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.638][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.639][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.641][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.643][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.644][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.647][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.649][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.651][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.652][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.656][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.662][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.663][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.665][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.666][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.668][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.671][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.681][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.682][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.684][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.687][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.690][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.692][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.695][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.696][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.700][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:55.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:55.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:55.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:55.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:55.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:55.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:55.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:55.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:55.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:55.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:55.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.842][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.847][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.852][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:55.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:55.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:55.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:55.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:55.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:55.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:55.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:55.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:55.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:55.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:55.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372625, tert-butyl 3-amino-2-fluoro-pyrrolidine-1-carboxylate, 3-amino-2-fluoro-1-pyrrolidinecarboxylic acid tert-butyl ester, tert-butyl 3-amino-2-fluoropyrrolidine-1-carboxylate, tert-butyl 3-azanyl-2-fluoranyl-pyrrolidine-1-carboxylate, ...].
biodb.DEBUG[2024-06-22 16:24:55.956][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:55.958][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:55.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:55.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:55.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:55.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:55.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:55.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:55.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:55.981][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:55.985][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:55.986][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-22 16:24:55.988][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:55.991][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-22 16:24:55.993][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:55.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:55.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:55.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:56.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:56.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:56.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:56.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:56.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.072][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.101][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.173][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:56.175][private$selectFields]
biodb.TRACE[2024-06-22 16:24:56.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:56.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:56.178][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:56.179][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.184][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.185][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.189][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.190][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.194][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.195][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.198][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.200][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.203][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.204][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.207][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.208][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.211][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.214][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.219][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.221][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.222][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.223][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.227][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.228][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.232][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.233][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.237][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.238][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.240][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.241][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.246][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.247][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.251][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.252][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.256][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.259][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.260][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.262][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.264][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.265][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.266][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.270][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.271][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.273][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.275][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.276][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.279][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.281][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.284][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.288][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.299][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.300][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.302][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.304][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.305][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.308][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.310][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.313][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.319][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.323][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.324][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.326][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.328][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.329][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.332][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:56.334][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:56.335][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.340][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.341][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.344][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.346][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.348][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.349][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.350][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.353][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.354][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.355][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.359][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.360][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.362][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.363][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.365][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.367][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.373][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.376][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.378][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.379][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.382][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.387][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.392][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.393][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.395][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.398][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.401][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.403][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.406][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.407][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.411][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:56.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.553][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.558][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.563][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171384639, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, ...].
biodb.DEBUG[2024-06-22 16:24:56.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:56.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:56.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:56.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:56.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:56.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:56.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:56.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.766][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.771][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.834][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:56.835][private$selectFields]
biodb.TRACE[2024-06-22 16:24:56.836][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:56.837][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:56.838][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:56.840][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.841][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.843][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.844][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.846][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.849][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.850][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.853][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.854][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.855][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.857][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.858][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.860][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.863][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.865][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.868][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.869][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.872][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.874][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.876][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.878][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.879][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.881][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.882][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.884][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.887][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.895][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.897][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.910][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.911][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.916][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:56.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.919][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.921][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:56.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.924][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:56.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:56.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.938][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.939][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:56.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.943][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.944][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:56.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.948][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.949][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:56.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.953][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.955][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:56.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.958][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.960][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:56.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.963][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:56.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:56.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.968][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:56.970][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:56.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.973][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.975][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:56.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.978][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:56.980][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:56.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.982][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.983][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:56.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.988][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.989][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:56.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.993][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:56.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:56.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:56.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:56.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:56.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.002][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.004][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.007][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.009][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.012][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-22 16:24:57.013][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-22 16:24:57.015][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.016][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.019][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.021][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.024][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.025][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.029][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.030][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.034][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.035][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.039][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.040][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.042][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.044][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.050][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.052][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.058][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.064][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.067][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.068][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.073][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.078][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.079][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.082][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.083][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.084][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.086][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.088][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.319][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374155, potassium;(2,4-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-06-22 16:24:57.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:57.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:57.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:57.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:57.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:57.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:57.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:57.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.431][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:57.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:57.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:57.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:57.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.500][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:57.501][private$selectFields]
biodb.TRACE[2024-06-22 16:24:57.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:57.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:57.505][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:57.506][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.507][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.511][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.512][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.516][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.517][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.519][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.521][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.522][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.524][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.525][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.527][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.529][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.530][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.532][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.535][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.536][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.541][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.548][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.549][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:57.551][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:57.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.554][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.556][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.558][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.559][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.563][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.564][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.574][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.575][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.579][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.580][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.584][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.589][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.590][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.592][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.593][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.595][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.598][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.599][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.603][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.604][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.608][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.609][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.611][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.613][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.627][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:57.628][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:57.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.630][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.632][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.641][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.651][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.652][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.654][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.656][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.657][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.660][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-22 16:24:57.662][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-22 16:24:57.663][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.668][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.669][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.671][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.672][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.674][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.677][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.678][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.682][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.683][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.687][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.688][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.691][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.695][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.696][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.705][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.706][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.711][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.714][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.715][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.717][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.719][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.724][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.725][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.726][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.730][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.731][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.742][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:57.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:57.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:57.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:57.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:57.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:57.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:57.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:57.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:57.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:57.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:57.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:57.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:57.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:57.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:57.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:57.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:57.980][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374057, potassium;(2,3-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-06-22 16:24:57.981][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:24:57.983][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:24:57.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:57.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:57.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:58.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:58.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:58.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:58.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:24:58.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:24:58.016][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:24:58.018][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-22 16:24:58.020][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:24:58.022][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-22 16:24:58.025][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:24:58.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:58.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:58.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:58.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:58.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:58.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:58.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:58.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.129][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.134][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:58.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:58.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:58.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:58.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.207][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.212][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.217][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:58.218][private$selectFields]
biodb.TRACE[2024-06-22 16:24:58.219][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:58.220][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:58.221][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:58.223][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.227][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.229][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.231][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.232][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.233][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.236][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.237][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.238][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.242][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.243][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.247][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.248][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.251][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.260][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.266][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.267][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.271][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.272][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.276][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.280][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:58.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:58.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.286][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.290][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.291][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.295][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.296][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.299][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.301][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.304][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.309][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.310][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.314][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.315][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.319][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.320][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.324][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.325][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.328][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.330][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.333][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.339][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.342][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.343][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.344][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.347][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.348][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.349][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.357][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.362][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.366][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.367][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:58.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:58.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.376][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.377][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.379][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.382][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.383][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.387][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.389][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.392][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.393][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:58.394][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:58.396][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.399][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.400][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.402][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.404][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.406][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.407][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.409][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.410][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.412][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.415][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.416][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.420][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.421][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.424][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.425][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.435][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.436][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.440][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.441][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.445][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.446][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.448][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.449][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.451][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.454][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:58.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:58.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.459][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.463][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.464][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.466][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.468][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.469][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.470][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.474][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:58.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.620][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.625][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.630][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:58.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:58.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:58.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:58.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:58.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:58.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.734][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [130032437, 3,7-diethyl-2-methyl-benzofuran-4-ol, 3,7-diethyl-2-methyl-4-benzofuranol, 3,7-diethyl-2-methyl-1-benzofuran-4-ol, 3,7-diethyl-2-methyl-1-benzofuran-4-ol, ...].
biodb.DEBUG[2024-06-22 16:24:58.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:58.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:58.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:58.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:58.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:58.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:58.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:58.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.843][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.849][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:58.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:58.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:58.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:58.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:58.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:58.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:58.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:58.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.927][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:58.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.934][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:58.936][private$selectFields]
biodb.TRACE[2024-06-22 16:24:58.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:58.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:58.941][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:58.943][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:58.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:58.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.948][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.949][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:58.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.953][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.954][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:58.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.958][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.959][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:58.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.961][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.963][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.964][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:58.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.967][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.969][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:58.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.972][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:58.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:58.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.976][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.977][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:58.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:58.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:58.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.987][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:58.995][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:58.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:58.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:58.999][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.004][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.009][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.011][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.014][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.019][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.021][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.024][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.025][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.029][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.030][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.034][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.035][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.039][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.040][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.044][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.045][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.049][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.050][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.052][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.054][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.055][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.058][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.060][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.063][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.064][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.067][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:59.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:59.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.073][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.074][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.078][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:59.079][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:59.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.081][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.082][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.086][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.087][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.092][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.093][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.098][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.101][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.102][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.103][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.105][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.107][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.108][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.112][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.113][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.115][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.116][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:59.118][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:59.119][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.124][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.125][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.129][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.130][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.133][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.135][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.138][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.140][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.143][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.144][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.148][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:59.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:59.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.161][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.162][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:59.164][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:59.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.166][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.167][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.169][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.176][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.177][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.181][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.183][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.186][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.187][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.188][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.190][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.192][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.193][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.197][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:59.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:59.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:59.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:59.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:59.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:59.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.330][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:59.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:59.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.335][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:59.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:59.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.340][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:59.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:59.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.455][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-06-22 16:24:59.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:24:59.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:24:59.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:24:59.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:24:59.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:24:59.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:24:59.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:24:59.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:59.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:59.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:59.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:59.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.559][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:59.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:59.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.564][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:59.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:59.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.638][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:59.639][private$selectFields]
biodb.TRACE[2024-06-22 16:24:59.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:24:59.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:24:59.642][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:59.644][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.647][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.649][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.650][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.652][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.653][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.655][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.658][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.659][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.663][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.664][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.667][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.668][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.669][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.671][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.673][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.674][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.677][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:59.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:59.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.683][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.687][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:59.688][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:59.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.692][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.693][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.695][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.701][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.703][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.705][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.706][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.711][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.712][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.714][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.719][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.720][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.723][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.724][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.725][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.729][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.732][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.733][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.735][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.737][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.738][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.739][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.743][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.744][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.747][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.748][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.749][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.751][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.753][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.754][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.757][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:59.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:59.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.766][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.772][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:59.773][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:59.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.777][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.778][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.780][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.785][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.786][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.790][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.792][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.796][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.797][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.800][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.801][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.809][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.812][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.813][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.815][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:24:59.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.817][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.818][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:59.820][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:24:59.821][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.826][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.827][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.831][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.832][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.836][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.837][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.841][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.842][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.846][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.847][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.850][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:24:59.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:24:59.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.860][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.862][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:24:59.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.864][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.865][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:24:59.866][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:24:59.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.870][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.871][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:24:59.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:24:59.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.880][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:24:59.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:24:59.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:24:59.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.889][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.890][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:24:59.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.894][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.895][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:24:59.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.899][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:24:59.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:24:59.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:24:59.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:24:59.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:24:59.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:24:59.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:24:59.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:24:59.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:24:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:24:59.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:24:59.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:24:59.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.042][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.047][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372625, tert-butyl 3-amino-2-fluoro-pyrrolidine-1-carboxylate, 3-amino-2-fluoro-1-pyrrolidinecarboxylic acid tert-butyl ester, tert-butyl 3-amino-2-fluoropyrrolidine-1-carboxylate, tert-butyl 3-azanyl-2-fluoranyl-pyrrolidine-1-carboxylate, ...].
biodb.DEBUG[2024-06-22 16:25:00.149][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:25:00.150][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-22 16:25:00.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:25:00.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:00.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:00.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:00.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:00.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:00.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:00.174][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-22 16:25:00.178][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-22 16:25:00.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-22 16:25:00.181][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:25:00.184][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-22 16:25:00.186][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-22 16:25:00.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:25:00.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:00.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:00.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:00.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:00.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:00.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:25:00.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:00.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:00.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:00.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:00.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.276][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.300][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.305][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.369][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:00.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:00.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:00.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:00.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.379][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:25:00.380][private$selectFields]
biodb.TRACE[2024-06-22 16:25:00.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:25:00.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:25:00.383][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:25:00.385][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:00.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:00.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.389][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.391][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.394][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.396][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.399][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.401][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.404][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.405][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.409][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.410][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.413][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.414][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.417][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.420][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.424][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.425][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.428][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.430][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.438][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.439][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.443][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.448][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.449][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.452][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.454][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.456][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.457][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.458][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.462][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:00.463][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:00.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.466][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.467][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:00.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:00.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.470][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.472][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.473][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.475][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.476][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.478][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.481][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.483][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.486][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.487][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.490][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.491][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.492][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.494][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.496][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.499][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.504][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.505][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.509][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.510][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.511][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.515][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.519][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.523][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.525][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.531][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.533][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.534][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.536][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.538][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.539][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.540][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.543][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.544][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:00.545][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:00.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.547][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.549][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:25:00.550][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:25:00.551][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:00.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:00.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.555][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.556][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.557][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.561][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.562][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.564][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.565][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.567][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.569][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.570][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.572][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.574][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.575][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.576][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.580][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.583][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.594][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.595][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.604][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.608][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.612][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.613][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.625][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.627][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.630][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.631][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.632][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.636][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:25:00.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:00.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:00.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:00.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:00.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:00.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:00.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.773][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.778][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.783][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:00.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:00.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:00.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:00.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:00.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:00.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:00.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171384639, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, ...].
biodb.DEBUG[2024-06-22 16:25:00.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:25:00.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:00.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:00.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:00.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:00.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:00.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:25:00.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:00.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:00.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:00.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:00.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:00.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:00.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:00.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:00.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:00.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:00.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:00.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:00.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:00.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.993][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:00.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:00.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:00.998][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:00.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:01.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.071][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.076][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.084][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:25:01.085][private$selectFields]
biodb.TRACE[2024-06-22 16:25:01.086][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:25:01.087][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:25:01.089][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:25:01.090][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.094][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.095][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.096][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.100][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.101][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.104][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.106][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.108][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.109][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.111][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.113][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.114][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.115][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.118][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.119][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.120][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.133][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:01.135][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:01.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.138][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.139][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.143][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.148][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.153][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.157][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.159][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.161][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.162][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.164][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.166][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.167][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.168][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.172][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.176][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.177][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.178][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.182][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.183][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.185][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.186][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.188][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.190][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.191][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.192][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.196][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.197][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.201][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.211][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.216][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:01.217][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:01.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.220][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.224][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.230][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.239][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.240][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.241][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.243][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.245][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.246][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.248][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.249][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.251][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.253][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.254][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-22 16:25:01.256][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-22 16:25:01.257][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.260][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.262][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.263][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.266][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.268][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.271][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.273][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.276][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.277][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.280][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.281][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.282][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.286][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.290][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.292][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.294][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.297][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.300][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.304][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.310][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.319][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.321][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.324][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.325][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.329][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:25:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374155, potassium;(2,4-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-06-22 16:25:01.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:25:01.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:01.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:01.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:01.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:01.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:01.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:25:01.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.674][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:01.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:01.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:01.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:01.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.748][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.753][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:25:01.754][private$selectFields]
biodb.TRACE[2024-06-22 16:25:01.755][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-22 16:25:01.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-22 16:25:01.757][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-22 16:25:01.759][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.763][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.765][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.768][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.769][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.773][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.774][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.778][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.779][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.781][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.783][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.784][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.787][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.797][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.798][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.801][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.802][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:01.803][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:01.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.807][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.810][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.811][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.816][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.821][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.822][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.826][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.827][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.831][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.832][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.834][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.836][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.837][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.847][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.853][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.854][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.857][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.858][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.859][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.863][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.864][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.868][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.869][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.872][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.873][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.874][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.878][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.883][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.884][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.887][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.888][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.889][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.893][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-22 16:25:01.894][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-22 16:25:01.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.898][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.899][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.907][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.909][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.918][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:01.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.923][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.925][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:01.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.928][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.929][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.930][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:01.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.934][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.935][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-22 16:25:01.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.937][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.938][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-22 16:25:01.940][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-22 16:25:01.941][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:01.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:01.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.945][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.947][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:01.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.950][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.952][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:01.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.955][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.956][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:01.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.959][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.960][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.961][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:01.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.964][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.965][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.966][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:01.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.969][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.970][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:01.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:01.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:01.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:01.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.981][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:01.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.984][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.986][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:01.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.989][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.990][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:01.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.994][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:01.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:01.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:01.997][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:01.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:02.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:02.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.003][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:02.005][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:02.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.007][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.008][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:02.009][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:02.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.013][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-22 16:25:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:02.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:02.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:02.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:02.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:02.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:02.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:02.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:02.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:02.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-22 16:25:02.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:02.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:02.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-22 16:25:02.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:02.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:02.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:02.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:02.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-22 16:25:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:02.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:02.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:02.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-22 16:25:02.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:02.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:02.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:02.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-22 16:25:02.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:02.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:02.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:02.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:02.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-22 16:25:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-22 16:25:02.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:02.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:02.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:02.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:02.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-22 16:25:02.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-22 16:25:02.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:02.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:02.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:02.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:02.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-22 16:25:02.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-22 16:25:02.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:02.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:02.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:02.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:02.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:02.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-22 16:25:02.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:02.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:02.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:02.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:02.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:02.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-22 16:25:02.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:02.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:02.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:02.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:02.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-22 16:25:02.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-22 16:25:02.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:02.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:02.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:02.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:02.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:02.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:02.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:02.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:02.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-22 16:25:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:02.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:02.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:02.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:02.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-22 16:25:02.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.247][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374057, potassium;(2,3-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-06-22 16:25:02.249][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-22 16:25:02.250][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-22 16:25:02.265][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:25:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:25:02.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:02.270][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-22 16:25:02.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-22 16:25:02.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:02.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:25:02.281][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-22 16:25:02.282][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-06-22 16:25:02.284][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-06-22 16:25:02.285][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-22 16:25:02.286][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.288][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.290][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-22 16:25:02.297][biodb::testContext]
biodb.INFO [2024-06-22 16:25:02.298][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-22 16:25:02.300][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-06-22 16:25:02.301][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-22 16:25:02.302][biodb::testContext]
biodb.INFO [2024-06-22 16:25:02.306][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-22 16:25:02.309][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-22 16:25:02.315][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:25:02.317][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-22 16:25:02.318][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-22 16:25:02.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.322][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-22 16:25:02.326][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-22 16:25:02.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.331][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-22 16:25:02.332][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-22 16:25:02.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.336][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-22 16:25:02.338][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-22 16:25:02.339][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-22 16:25:02.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.343][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-22 16:25:02.345][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-22 16:25:02.346][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-22 16:25:02.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.350][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-22 16:25:02.352][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-22 16:25:02.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.356][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-22 16:25:02.357][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-22 16:25:02.359][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-22 16:25:02.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.363][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-22 16:25:02.364][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-22 16:25:02.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.369][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-22 16:25:02.370][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-22 16:25:02.371][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-22 16:25:02.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.376][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-22 16:25:02.377][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-22 16:25:02.378][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-22 16:25:02.379][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-22 16:25:02.381][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-22 16:25:02.382][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-22 16:25:02.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.386][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-22 16:25:02.388][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-22 16:25:02.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.392][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-22 16:25:02.394][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-22 16:25:02.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.398][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-22 16:25:02.399][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-22 16:25:02.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.404][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-22 16:25:02.405][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-22 16:25:02.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.409][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-22 16:25:02.411][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-22 16:25:02.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.415][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-22 16:25:02.416][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-22 16:25:02.420][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-22 16:25:02.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.425][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-22 16:25:02.426][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-22 16:25:02.428][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-22 16:25:02.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.432][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-22 16:25:02.434][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.435][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-22 16:25:02.437][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.438][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:25:02.439][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.440][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.442][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.443][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.444][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-22 16:25:02.445][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:25:02.447][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.448][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-22 16:25:02.449][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:25:02.450][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.451][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.453][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:25:02.453][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:25:02.453][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:25:02.453][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-22 16:25:02.453][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-22 16:25:02.454][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:25:02.455][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:02.456][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:02.457][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:25:02.458][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:02.460][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:02.461][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.462][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.463][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:25:02.464][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:25:02.465][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.467][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.468][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-22 16:25:02.470][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.471][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-22 16:25:02.472][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.474][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:25:02.475][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.476][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.477][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.478][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.480][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-22 16:25:02.481][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:25:02.482][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.483][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-22 16:25:02.484][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:25:02.486][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.487][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.488][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:25:02.488][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:25:02.488][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:25:02.488][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-22 16:25:02.488][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-22 16:25:02.489][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:25:02.490][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:02.491][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:02.493][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:25:02.494][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:02.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:02.496][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.497][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.498][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:25:02.499][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:25:02.501][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.502][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.503][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-22 16:25:02.505][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.506][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-22 16:25:02.508][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.509][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:25:02.510][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.511][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.512][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.513][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.515][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-22 16:25:02.516][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:25:02.517][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.518][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-22 16:25:02.519][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:25:02.521][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.522][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.523][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.524][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:25:02.525][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:02.527][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:02.528][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:25:02.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:02.530][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:02.531][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.532][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.533][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:25:02.535][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:25:02.536][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.537][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.538][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-22 16:25:02.540][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.541][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-22 16:25:02.543][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.544][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:25:02.545][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.546][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.547][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.548][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.550][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-22 16:25:02.551][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:25:02.552][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.553][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-22 16:25:02.555][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:25:02.556][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.557][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.558][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.559][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-22 16:25:02.560][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:02.562][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:02.563][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:25:02.564][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:02.565][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:02.566][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.567][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.568][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:25:02.570][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:25:02.571][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.572][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.573][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:25:02.574][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.683][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-22 16:25:02.685][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-22 16:25:02.687][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-22 16:25:02.688][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-22 16:25:02.690][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-22 16:25:02.692][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-22 16:25:02.693][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-22 16:25:02.695][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-22 16:25:02.697][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-22 16:25:02.698][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-22 16:25:02.700][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-22 16:25:02.701][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-22 16:25:02.703][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-22 16:25:02.705][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-22 16:25:02.706][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-22 16:25:02.708][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-22 16:25:02.710][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-22 16:25:02.711][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-22 16:25:02.713][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-22 16:25:02.714][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-22 16:25:02.716][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-22 16:25:02.718][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-22 16:25:02.719][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-22 16:25:02.721][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-22 16:25:02.723][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-22 16:25:02.724][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-22 16:25:02.726][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-22 16:25:02.727][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-22 16:25:02.729][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-22 16:25:02.731][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-22 16:25:02.732][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-22 16:25:02.734][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-22 16:25:02.735][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-22 16:25:02.737][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-22 16:25:02.738][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-22 16:25:02.740][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-22 16:25:02.742][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-22 16:25:02.743][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-22 16:25:02.745][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-22 16:25:02.746][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-22 16:25:02.748][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-22 16:25:02.749][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-22 16:25:02.751][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-22 16:25:02.753][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-22 16:25:02.754][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-22 16:25:02.756][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-22 16:25:02.757][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-22 16:25:02.759][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-22 16:25:02.760][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-22 16:25:02.762][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-22 16:25:02.764][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-22 16:25:02.765][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-22 16:25:02.767][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-22 16:25:02.768][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-22 16:25:02.770][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-22 16:25:02.772][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-22 16:25:02.773][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-22 16:25:02.775][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-22 16:25:02.776][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-22 16:25:02.778][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-22 16:25:02.779][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-22 16:25:02.781][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-22 16:25:02.783][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-22 16:25:02.784][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-22 16:25:02.786][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-22 16:25:02.787][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-22 16:25:02.789][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-22 16:25:02.790][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-22 16:25:02.792][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-22 16:25:02.794][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-22 16:25:02.795][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-22 16:25:02.797][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-22 16:25:02.798][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-22 16:25:02.800][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-22 16:25:02.801][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-22 16:25:02.803][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-22 16:25:02.805][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-22 16:25:02.806][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-22 16:25:02.808][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-22 16:25:02.809][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-22 16:25:02.811][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-22 16:25:02.812][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-22 16:25:02.814][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-22 16:25:02.816][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-22 16:25:02.819][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-22 16:25:02.820][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-22 16:25:02.821][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.824][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-22 16:25:02.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:02.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:02.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:02.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:02.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:02.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-22 16:25:02.962][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-22 16:25:02.965][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-22 16:25:02.967][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.968][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-22 16:25:02.970][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.971][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:25:02.972][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.973][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.975][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.976][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.977][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-22 16:25:02.978][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:25:02.979][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:02.981][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-22 16:25:02.982][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:25:02.983][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-22 16:25:02.983][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-22 16:25:02.984][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:02.986][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:02.987][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-22 16:25:02.988][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:02.989][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:02.990][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:25:02.991][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:02.993][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:02.994][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:25:02.995][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-22 16:25:02.995][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-22 16:25:02.996][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:25:02.997][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:25:02.998][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.000][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:03.001][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-22 16:25:03.003][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.004][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-22 16:25:03.005][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.007][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:25:03.008][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.009][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:25:03.010][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.012][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:25:03.013][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:25:03.014][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:25:03.015][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.016][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-22 16:25:03.018][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:25:03.019][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-22 16:25:03.019][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-22 16:25:03.019][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-22 16:25:03.019][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-22 16:25:03.019][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-22 16:25:03.019][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-22 16:25:03.020][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:03.021][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:25:03.022][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-22 16:25:03.024][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:03.025][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:03.026][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:25:03.027][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:03.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:03.029][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:25:03.031][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:25:03.031][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:25:03.032][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:25:03.033][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:25:03.034][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.035][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:03.037][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-22 16:25:03.039][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:03.040][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-22 16:25:03.041][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.043][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:25:03.044][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.045][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:25:03.046][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.047][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:25:03.049][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:25:03.050][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:25:03.051][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.052][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-22 16:25:03.054][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.055][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-22 16:25:03.064][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:03.066][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-22 16:25:03.066][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-22 16:25:03.066][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-22 16:25:03.068][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-22 16:25:03.069][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:03.070][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:03.072][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:25:03.073][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:03.074][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:03.075][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:25:03.076][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:25:03.076][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:25:03.076][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-22 16:25:03.078][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:25:03.079][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:25:03.080][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.081][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-22 16:25:03.083][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-22 16:25:03.085][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.086][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-22 16:25:03.088][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.089][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-22 16:25:03.090][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.091][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-22 16:25:03.093][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.094][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-22 16:25:03.095][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-22 16:25:03.096][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-22 16:25:03.098][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.099][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-22 16:25:03.100][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-22 16:25:03.101][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-22 16:25:03.101][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-22 16:25:03.103][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-22 16:25:03.104][self$setPropertyValue]
biodb.DEBUG[2024-06-22 16:25:03.105][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-22 16:25:03.106][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:03.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:03.109][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-22 16:25:03.110][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-22 16:25:03.111][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-22 16:25:03.112][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-22 16:25:03.113][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-22 16:25:03.113][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-22 16:25:03.113][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-22 16:25:03.115][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-22 16:25:03.116][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-22 16:25:03.117][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-22 16:25:03.118][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-22 16:25:03.120][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-22 16:25:03.121][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-22 16:25:03.123][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-22 16:25:03.125][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-22 16:25:03.126][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-22 16:25:03.128][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-22 16:25:03.134][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-22 16:25:03.135][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-06-22 16:25:03.136][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-22 16:25:03.138][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-06-22 16:25:03.140][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-22 16:25:03.141][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-22 16:25:03.143][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-06-22 16:25:03.144][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-22 16:25:03.145][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-22 16:25:03.147][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-22 16:25:03.152][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-06-22 16:25:03.159][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.160][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-22 16:25:03.161][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:25:03.163][biodb::testThat]
biodb.TRACE[2024-06-22 16:25:03.167][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-06-22 16:25:03.168][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:25:03.172][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-06-22 16:25:03.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:25:03.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:03.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:03.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:03.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:03.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:03.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:25:03.191][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.192][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.194][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.201][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.202][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:25:03.261][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-06-22 16:25:03.264][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.268][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:25:03.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:25:03.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:25:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:25:03.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.293][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:25:03.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:25:03.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.393][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.397][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.428][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.448][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.452][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.459][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.463][ef$get] fields variable is a list.
biodb.INFO [2024-06-22 16:25:03.476][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.478][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-22 16:25:03.479][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:25:03.480][biodb::testThat]
biodb.DEBUG[2024-06-22 16:25:03.483][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-06-22 16:25:03.485][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-22 16:25:03.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-06-22 16:25:03.499][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-22 16:25:03.514][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-06-22 16:25:03.516][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-06-22 16:25:03.518][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-06-22 16:25:03.519][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-06-22 16:25:03.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-22 16:25:03.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:03.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:03.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:03.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:03.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:03.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-22 16:25:03.538][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.541][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.563][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-22 16:25:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-22 16:25:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-22 16:25:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-22 16:25:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-22 16:25:03.623][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-06-22 16:25:03.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-22 16:25:03.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-22 16:25:03.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:25:03.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-22 16:25:03.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:25:03.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-22 16:25:03.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:25:03.651][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.653][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-22 16:25:03.654][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:25:03.655][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.665][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.666][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-22 16:25:03.667][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:25:03.668][biodb::testThat]
biodb.WARN [2024-06-22 16:25:03.672][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-06-22 16:25:03.677][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-06-22 16:25:03.689][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.690][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-22 16:25:03.692][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:25:03.693][biodb::testThat]
biodb.TRACE[2024-06-22 16:25:03.707][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.712][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:25:03.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:25:03.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.722][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.727][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:25:03.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:25:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.737][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:25:03.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:25:03.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.743][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.748][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-22 16:25:03.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:25:03.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-22 16:25:03.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.758][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-22 16:25:03.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.768][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-22 16:25:03.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-22 16:25:03.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-22 16:25:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-22 16:25:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-22 16:25:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-22 16:25:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-22 16:25:03.786][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.788][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-22 16:25:03.789][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:25:03.790][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.802][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.803][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-22 16:25:03.804][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:25:03.805][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.817][biodb::testThat]
biodb.INFO [2024-06-22 16:25:03.819][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-22 16:25:03.820][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:25:03.821][biodb::testThat]
biodb.DEBUG[2024-06-22 16:25:03.826][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-06-22 16:25:03.980][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-06-22 16:25:04.084][biodb::testThat]
biodb.INFO [2024-06-22 16:25:04.085][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-22 16:25:04.086][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-22 16:25:04.088][biodb::testThat]
biodb.DEBUG[2024-06-22 16:25:04.245][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-06-22 16:25:04.395][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-22 16:25:04.397][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-06-22 16:25:04.398][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-06-22 16:25:04.400][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-22 16:25:04.401][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-22 16:25:04.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-22 16:25:04.403][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-22 16:25:04.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-22 16:25:04.405][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-22 16:25:04.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1033 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1033 ]
> 
> proc.time()
   user  system elapsed 
  56.42   14.96  109.57

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbNcbi/DESCRIPTION' ... OK
* this is package 'biodbNcbi' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbNcbi' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... WARNING
'library' or 'require' call not declared from: 'biodbNci'
* checking tests in 'longtests' ...
  Running 'testthat.R'
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'F:/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log'
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package 'biodbNcbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)