| Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-30 11:35:20 -0400 (Thu, 30 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4518 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2071/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| srnadiff 1.24.0 (landing page) Zytnicki Matthias
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
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To the developers/maintainers of the srnadiff package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/srnadiff.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: srnadiff |
| Version: 1.24.0 |
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL srnadiff |
| StartedAt: 2024-05-29 15:30:57 -0400 (Wed, 29 May 2024) |
| EndedAt: 2024-05-29 15:32:19 -0400 (Wed, 29 May 2024) |
| EllapsedTime: 82.0 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL srnadiff ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘srnadiff’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ using C++11 g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c rcpp_hmm.cpp -o rcpp_hmm.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c rcpp_ir.cpp -o rcpp_ir.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c rcpp_main.cpp -o rcpp_main.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c rcpp_utils.cpp -o rcpp_utils.o gcc -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c srnadiff_init.c -o srnadiff_init.o g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o srnadiff.so RcppExports.o rcpp_hmm.o rcpp_ir.o rcpp_main.o rcpp_utils.o srnadiff_init.o -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-srnadiff/00new/srnadiff/libs ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'IRanges::window<-' by 'stats::window<-' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::cor' by 'stats::cor' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::cov' by 'stats::cov' when loading 'srnadiff' Warning: replacing previous import 'rtracklayer::start' by 'stats::start' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::window' by 'stats::window' when loading 'srnadiff' Warning: replacing previous import 'IRanges::quantile' by 'stats::quantile' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'srnadiff' Warning: replacing previous import 'rtracklayer::offset' by 'stats::offset' when loading 'srnadiff' Warning: replacing previous import 'rtracklayer::end' by 'stats::end' when loading 'srnadiff' Warning: replacing previous import 'IRanges::IQR' by 'stats::IQR' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::var' by 'stats::var' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::xtabs' by 'stats::xtabs' when loading 'srnadiff' Warning: replacing previous import 'IRanges::median' by 'stats::median' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::aggregate' by 'stats::aggregate' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::na.omit' by 'stats::na.omit' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'srnadiff' Warning: replacing previous import 'IRanges::smoothEnds' by 'stats::smoothEnds' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::na.exclude' by 'stats::na.exclude' when loading 'srnadiff' Warning: replacing previous import 'IRanges::runmed' by 'stats::runmed' when loading 'srnadiff' Warning: replacing previous import 'IRanges::mad' by 'stats::mad' when loading 'srnadiff' Warning: replacing previous import 'GenomicRanges::update' by 'stats::update' when loading 'srnadiff' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'IRanges::window<-' by 'stats::window<-' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::cor' by 'stats::cor' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::cov' by 'stats::cov' when loading 'srnadiff' Warning: replacing previous import 'rtracklayer::start' by 'stats::start' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::window' by 'stats::window' when loading 'srnadiff' Warning: replacing previous import 'IRanges::quantile' by 'stats::quantile' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'srnadiff' Warning: replacing previous import 'rtracklayer::offset' by 'stats::offset' when loading 'srnadiff' Warning: replacing previous import 'rtracklayer::end' by 'stats::end' when loading 'srnadiff' Warning: replacing previous import 'IRanges::IQR' by 'stats::IQR' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::var' by 'stats::var' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::xtabs' by 'stats::xtabs' when loading 'srnadiff' Warning: replacing previous import 'IRanges::median' by 'stats::median' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::aggregate' by 'stats::aggregate' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::na.omit' by 'stats::na.omit' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'srnadiff' Warning: replacing previous import 'IRanges::smoothEnds' by 'stats::smoothEnds' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::na.exclude' by 'stats::na.exclude' when loading 'srnadiff' Warning: replacing previous import 'IRanges::runmed' by 'stats::runmed' when loading 'srnadiff' Warning: replacing previous import 'IRanges::mad' by 'stats::mad' when loading 'srnadiff' Warning: replacing previous import 'GenomicRanges::update' by 'stats::update' when loading 'srnadiff' ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: replacing previous import 'IRanges::window<-' by 'stats::window<-' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::cor' by 'stats::cor' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::cov' by 'stats::cov' when loading 'srnadiff' Warning: replacing previous import 'rtracklayer::start' by 'stats::start' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::window' by 'stats::window' when loading 'srnadiff' Warning: replacing previous import 'IRanges::quantile' by 'stats::quantile' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::complete.cases' by 'stats::complete.cases' when loading 'srnadiff' Warning: replacing previous import 'rtracklayer::offset' by 'stats::offset' when loading 'srnadiff' Warning: replacing previous import 'rtracklayer::end' by 'stats::end' when loading 'srnadiff' Warning: replacing previous import 'IRanges::IQR' by 'stats::IQR' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::var' by 'stats::var' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::xtabs' by 'stats::xtabs' when loading 'srnadiff' Warning: replacing previous import 'IRanges::median' by 'stats::median' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::aggregate' by 'stats::aggregate' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::na.omit' by 'stats::na.omit' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::sd' by 'stats::sd' when loading 'srnadiff' Warning: replacing previous import 'IRanges::smoothEnds' by 'stats::smoothEnds' when loading 'srnadiff' Warning: replacing previous import 'S4Vectors::na.exclude' by 'stats::na.exclude' when loading 'srnadiff' Warning: replacing previous import 'IRanges::runmed' by 'stats::runmed' when loading 'srnadiff' Warning: replacing previous import 'IRanges::mad' by 'stats::mad' when loading 'srnadiff' Warning: replacing previous import 'GenomicRanges::update' by 'stats::update' when loading 'srnadiff' ** testing if installed package keeps a record of temporary installation path * DONE (srnadiff)