| Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-07 20:25 -0400 (Fri, 07 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4755 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4489 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4520 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1419/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nethet 1.36.0 (landing page) Nicolas Staedler
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the nethet package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nethet.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: nethet |
| Version: 1.36.0 |
| Command: chmod a+r nethet -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data nethet |
| StartedAt: 2024-06-05 21:12:46 -0400 (Wed, 05 Jun 2024) |
| EndedAt: 2024-06-05 21:16:44 -0400 (Wed, 05 Jun 2024) |
| EllapsedTime: 238.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r nethet -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data nethet ### ############################################################################## ############################################################################## * checking for file 'nethet/DESCRIPTION' ... OK * preparing 'nethet': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'nethet.Rnw' using knitr !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. !!! Error: Cannot call Ghostscript: `mgs' (No such file or directory/The system cannot find the file specified)! pdfcrop: major issue: User/administrator updates are out-of-sync. texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "nethet.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'nethet.Rnw' failed with diagnostics: running 'texi2dvi' on 'nethet.tex' failed LaTeX errors: s/nethet.tex:194: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:225: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:259: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:289: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:329: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:353: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:480: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:691: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:720: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:772: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:836: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:856: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:876: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:902: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:922: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... s/nethet.tex:932: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... --- failed re-building 'nethet.Rnw' SUMMARY: processing the following file failed: 'nethet.Rnw' Error: Vignette re-building failed. Execution halted