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This page was generated on 2024-05-31 17:03:05 -0400 (Fri, 31 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4753
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1271/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miloR 2.0.0  (landing page)
Mike Morgan
Snapshot Date: 2024-05-30 18:28:32 -0400 (Thu, 30 May 2024)
git_url: https://git.bioconductor.org/packages/miloR
git_branch: RELEASE_3_19
git_last_commit: 97eb8a7
git_last_commit_date: 2024-04-30 11:34:02 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

BUILD results for miloR on nebbiolo1


To the developers/maintainers of the miloR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/miloR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: miloR
Version: 2.0.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data miloR
StartedAt: 2024-05-30 23:01:24 -0400 (Thu, 30 May 2024)
EndedAt: 2024-05-30 23:17:09 -0400 (Thu, 30 May 2024)
EllapsedTime: 945.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data miloR
###
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* checking for file ‘miloR/DESCRIPTION’ ... OK
* preparing ‘miloR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘milo_contrasts.Rmd’ using rmarkdown

Quitting from lines 47-50 [unnamed-chunk-2] (milo_contrasts.Rmd)
Error: processing vignette 'milo_contrasts.Rmd' failed with diagnostics:
failed to load resource
  name: EH4592
  title: SMARTseq processed counts (day 1)
  reason: unknown input format
--- failed re-building ‘milo_contrasts.Rmd’

--- re-building ‘milo_demo.Rmd’ using rmarkdown
--- finished re-building ‘milo_demo.Rmd’

--- re-building ‘milo_gastrulation.Rmd’ using rmarkdown
Warning: ggrepel: 9 unlabeled data points (too many overlaps). Consider increasing max.overlaps
--- finished re-building ‘milo_gastrulation.Rmd’

--- re-building ‘milo_glmm.Rmd’ using rmarkdown
Warning: call dbDisconnect() when finished working with a connection
--- finished re-building ‘milo_glmm.Rmd’

SUMMARY: processing the following file failed:
  ‘milo_contrasts.Rmd’

Error: Vignette re-building failed.
Execution halted