Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-07-24 09:05 -0400 (Wed, 24 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4747 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4489 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4518 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 486/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.12.0 (landing page) Oluwafemi Olusoji
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.12.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.12.0.tar.gz |
StartedAt: 2024-07-22 03:19:20 -0400 (Mon, 22 Jul 2024) |
EndedAt: 2024-07-22 03:23:25 -0400 (Mon, 22 Jul 2024) |
EllapsedTime: 245.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/cyanoFilter.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.5 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 20.407 0.968 21.131 ggpairsDens 6.910 0.186 8.818 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 1.738 | 0.113 | 2.366 | |
PhytoFilter | 1.550 | 0.134 | 1.978 | |
PhytopFilter | 1.530 | 0.127 | 1.944 | |
accTest | 0.908 | 0.058 | 1.116 | |
accuracy | 1.233 | 0.092 | 1.537 | |
cellmargin | 0.747 | 0.051 | 1.034 | |
clusterExtract | 2.100 | 0.080 | 2.707 | |
clusterExtractp | 2.330 | 0.083 | 3.033 | |
debrisNc | 0.766 | 0.092 | 1.075 | |
fullFlowframe-MarginEvents-method | 0.706 | 0.042 | 0.949 | |
fullFlowframe-PhytopFilter-method | 1.783 | 0.085 | 2.346 | |
fullFlowframe | 0.695 | 0.040 | 0.916 | |
gateFunc | 20.407 | 0.968 | 21.131 | |
ggpairsDens | 6.910 | 0.186 | 8.818 | |
ggplotDens | 1.492 | 0.085 | 1.982 | |
ggplotDens2 | 1.953 | 0.074 | 2.803 | |
goodfcs | 0.096 | 0.012 | 0.926 | |
is.DebrisFilter | 0.001 | 0.000 | 0.001 | |
is.MarginEvents | 0.000 | 0.001 | 0.001 | |
is.PhytopFilter | 0.001 | 0.001 | 0.001 | |
is.flowFrame | 0.000 | 0.001 | 0.001 | |
is.flowSet | 0.001 | 0.000 | 0.001 | |
lnTrans | 0.494 | 0.030 | 0.654 | |
newFlowframe | 0.538 | 0.210 | 0.950 | |
nona | 0.558 | 0.022 | 0.718 | |
noneg | 0.397 | 0.020 | 0.535 | |
oneDgate | 0.531 | 0.197 | 0.911 | |
pairsPlot | 2.901 | 0.244 | 3.976 | |
pigmentGate | 0.652 | 0.123 | 0.990 | |
reducedFlowframe-MarginEvents-method | 0.733 | 0.043 | 0.970 | |
reducedFlowframe | 0.707 | 0.041 | 0.933 | |
retain | 0.037 | 0.003 | 0.049 | |
rowNumbers | 0.518 | 0.138 | 0.863 | |
summaries-DebrisFilter-method | 0.695 | 0.040 | 0.907 | |
summaries-MarginEvents-method | 0.724 | 0.044 | 0.963 | |
summaries-PhytopFilter-method | 1.512 | 0.061 | 1.970 | |
summaries | 0.736 | 0.044 | 0.970 | |