Back to Multiple platform build/check report for BioC 3.19:   simplified   long
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2024-06-14 14:38 -0400 (Fri, 14 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4757
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4491
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2231/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TypeInfo 1.70.0  (landing page)
Duncan Temple Lang
Snapshot Date: 2024-06-12 14:00 -0400 (Wed, 12 Jun 2024)
git_url: https://git.bioconductor.org/packages/TypeInfo
git_branch: RELEASE_3_19
git_last_commit: e9a3613
git_last_commit_date: 2024-04-30 10:15:32 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped


BUILD results for TypeInfo on palomino3

To the developers/maintainers of the TypeInfo package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TypeInfo.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TypeInfo
Version: 1.70.0
Command: chmod a+r TypeInfo -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TypeInfo
StartedAt: 2024-06-12 23:39:00 -0400 (Wed, 12 Jun 2024)
EndedAt: 2024-06-12 23:39:29 -0400 (Wed, 12 Jun 2024)
EllapsedTime: 28.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r TypeInfo -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TypeInfo
###
##############################################################################
##############################################################################


* checking for file 'TypeInfo/DESCRIPTION' ... OK
* preparing 'TypeInfo':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'TypeInfoNews.Rnw' using Sweave
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "TypeInfoNews.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'TypeInfoNews.Rnw' failed with diagnostics:
running 'texi2dvi' on 'TypeInfoNews.tex' failed

LaTeX errors:
es/TypeInfoNews.tex:221: Argument of \__intarray_bounds_error:NNnw has an extra
 }.
<inserted text> 
                \par 
l.221 
es/TypeInfoNews.tex:221: Paragraph ended before \__intarray_bounds_error:NNnw w
as complete.
<to be read again> 
                   \par 
l.221 
es/TypeInfoNews.tex:221: Argument of \__intarray_bounds_error:NNnw has an extra
 }.
<inserted text> 
                \par 
l.221 
es/TypeInfoNews.tex:221: Paragraph ended before \__intarray_bounds_error:NNnw w
as complete.
<to be read again> 
                   \par 
l.221 

--- failed re-building 'TypeInfoNews.Rnw'

SUMMARY: processing the following file failed:
  'TypeInfoNews.Rnw'

Error: Vignette re-building failed.
Execution halted