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This page was generated on 2024-05-30 11:35:50 -0400 (Thu, 30 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4753
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4518
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1713/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ReactomeGSA 1.18.0  (landing page)
Johannes Griss
Snapshot Date: 2024-05-29 14:00:10 -0400 (Wed, 29 May 2024)
git_url: https://git.bioconductor.org/packages/ReactomeGSA
git_branch: RELEASE_3_19
git_last_commit: 4bfdb0f
git_last_commit_date: 2024-04-30 11:17:23 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

BUILD results for ReactomeGSA on lconway


To the developers/maintainers of the ReactomeGSA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeGSA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ReactomeGSA
Version: 1.18.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA
StartedAt: 2024-05-29 18:06:32 -0400 (Wed, 29 May 2024)
EndedAt: 2024-05-29 18:09:48 -0400 (Wed, 29 May 2024)
EllapsedTime: 196.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeGSA
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* checking for file ‘ReactomeGSA/DESCRIPTION’ ... OK
* preparing ‘ReactomeGSA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘analysing-scRNAseq.Rmd’ using rmarkdown

Quitting from lines 87-93 [unnamed-chunk-5] (analysing-scRNAseq.Rmd)
Error: processing vignette 'analysing-scRNAseq.Rmd' failed with diagnostics:
unable to find an inherited method for function 'pathways' for signature 'x = "NULL"'
--- failed re-building ‘analysing-scRNAseq.Rmd’

--- re-building ‘reanalysing-public-data.Rmd’ using rmarkdown

Quitting from lines 154-164 [unnamed-chunk-10] (reanalysing-public-data.Rmd)
Error: processing vignette 'reanalysing-public-data.Rmd' failed with diagnostics:
Request failed (503 - Service Unavailable): Failed to connect to storage system. Please try again in a few minutes.
--- failed re-building ‘reanalysing-public-data.Rmd’

--- re-building ‘using-reactomegsa.Rmd’ using rmarkdown

Quitting from lines 220-221 [unnamed-chunk-7] (using-reactomegsa.Rmd)
Error: processing vignette 'using-reactomegsa.Rmd' failed with diagnostics:
unable to find an inherited method for function 'result_types' for signature 'x = "NULL"'
--- failed re-building ‘using-reactomegsa.Rmd’

SUMMARY: processing the following files failed:
  ‘analysing-scRNAseq.Rmd’ ‘reanalysing-public-data.Rmd’
  ‘using-reactomegsa.Rmd’

Error: Vignette re-building failed.
Execution halted