| Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-30 11:35:48 -0400 (Thu, 30 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4518 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1568/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Pigengene 1.30.0 (landing page) Habil Zare
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the Pigengene package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Pigengene.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Pigengene |
| Version: 1.30.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Pigengene |
| StartedAt: 2024-05-29 17:57:32 -0400 (Wed, 29 May 2024) |
| EndedAt: 2024-05-29 18:00:57 -0400 (Wed, 29 May 2024) |
| EllapsedTime: 204.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Pigengene
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* checking for file ‘Pigengene/DESCRIPTION’ ... OK
* preparing ‘Pigengene’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Pigengene_inference.Rnw’ using knitr
2024-05-29 17:59:10.659 R[62347:1966688710] XType: com.apple.fonts is not accessible.
2024-05-29 17:59:10.659 R[62347:1966688710] XType: XTFontStaticRegistry is enabled.
Error: processing vignette 'Pigengene_inference.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'Pigengene_inference.tex' failed.
LaTeX errors:
! Package xcolor Error: Undefined color `fgcolor'.
See the xcolor package documentation for explanation.
Type H <return> for immediate help.
...
! Emergency stop.
...
l.133 ...{rgb}{0.941, 0.941, 0.941}\color{fgcolor}
\begin{kframe}
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘Pigengene_inference.Rnw’
SUMMARY: processing the following file failed:
‘Pigengene_inference.Rnw’
Error: Vignette re-building failed.
Execution halted