Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-31 17:03:00 -0400 (Fri, 31 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4464 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 927/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GSgalgoR 1.14.0 (landing page) Carlos Catania
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the GSgalgoR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSgalgoR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: GSgalgoR |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:GSgalgoR.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings GSgalgoR_1.14.0.tar.gz |
StartedAt: 2024-05-31 04:23:16 -0400 (Fri, 31 May 2024) |
EndedAt: 2024-05-31 04:27:45 -0400 (Fri, 31 May 2024) |
EllapsedTime: 269.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GSgalgoR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:GSgalgoR.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings GSgalgoR_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/GSgalgoR.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘GSgalgoR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GSgalgoR’ version ‘1.14.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GSgalgoR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed classify_multiple 2.653 0.334 8.409 callback_base_report 2.667 0.127 8.189 plot_pareto 2.730 0.058 5.971 create_centroids 2.191 0.058 5.441 callback_base_return_pop 2.021 0.149 7.484 callback_default 1.924 0.184 7.522 to_dataframe 1.918 0.158 5.403 callback_no_report 1.914 0.145 7.406 to_list 1.855 0.172 5.225 non_dominated_summary 1.918 0.027 5.271 galgo 1.637 0.099 5.305 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
GSgalgoR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL GSgalgoR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘GSgalgoR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSgalgoR)
GSgalgoR.Rcheck/tests/testthat.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(GSgalgoR) > > test_check("GSgalgoR") .......... k rnkIndex CrowD result.1 8 0.02212350 201.10126 1 Inf result.3 9 0.02402496 160.41638 1 1.37352 result.4 8 0.03651880 48.37265 1 Inf k rnkIndex CrowD result.1 8 0.02212350 201.10126 1 Inf result.3 2 0.11803624 30.01863 1 Inf result.4 4 0.04509859 173.43985 1 1.798893 ......[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 18.849 2.481 83.632
GSgalgoR.Rcheck/GSgalgoR-Ex.timings
name | user | system | elapsed | |
calculate_distance | 2.234 | 0.080 | 2.315 | |
callback_base_report | 2.667 | 0.127 | 8.189 | |
callback_base_return_pop | 2.021 | 0.149 | 7.484 | |
callback_default | 1.924 | 0.184 | 7.522 | |
callback_no_report | 1.914 | 0.145 | 7.406 | |
classify_multiple | 2.653 | 0.334 | 8.409 | |
cluster_algorithm | 1.227 | 0.047 | 1.274 | |
cluster_classify | 0.543 | 0.032 | 0.575 | |
cosine_similarity | 0 | 0 | 0 | |
create_centroids | 2.191 | 0.058 | 5.441 | |
galgo | 1.637 | 0.099 | 5.305 | |
k_centroids | 1.256 | 0.024 | 1.280 | |
non_dominated_summary | 1.918 | 0.027 | 5.271 | |
plot_pareto | 2.730 | 0.058 | 5.971 | |
surv_fitness | 0.595 | 0.048 | 0.643 | |
to_dataframe | 1.918 | 0.158 | 5.403 | |
to_list | 1.855 | 0.172 | 5.225 | |