Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-11 14:43 -0400 (Tue, 11 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4757 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4491 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4522 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4468 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 552/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DeProViR 1.0.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the DeProViR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeProViR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: DeProViR |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeProViR |
StartedAt: 2024-06-09 20:34:45 -0400 (Sun, 09 Jun 2024) |
EndedAt: 2024-06-09 20:37:03 -0400 (Sun, 09 Jun 2024) |
EllapsedTime: 138.7 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeProViR ### ############################################################################## ############################################################################## * checking for file ‘DeProViR/DESCRIPTION’ ... OK * preparing ‘DeProViR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DeProViR_tutorial.Rmd’ using rmarkdown /Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020 warnings.warn( Quitting from lines 218-246 [unnamed-chunk-2] (DeProViR_tutorial.Rmd) Error: processing vignette 'DeProViR_tutorial.Rmd' failed with diagnostics: ValueError: Unrecognized keyword arguments passed to Embedding: {'input_length': 1000, 'weights': [array([[ 0. , 0. , 0. , ..., 0. , 0. , 0. ], [-0.45433 , 1.0234 , 0.024278, ..., -0.43769 , 1.0169 , -0.26706 ], [-0.27086 , 0.044006, -0.02026 , ..., -0.4923 , 0.63687 , 0.23642 ], ..., [-0.20314 , 0.50467 , -0.25223 , ..., -0.34618 , -0.18627 , -0.31606 ], [ 0.29492 , 0.56874 , -0.20245 , ..., -0.16875 , 0.51895 , -0.50086 ], [-0.11752 , 0.97272 , -0.29021 , ..., -0.50598 , -0.28476 , -0.70045 ]])]} Run `reticulate::py_last_error()` for details. --- failed re-building ‘DeProViR_tutorial.Rmd’ SUMMARY: processing the following file failed: ‘DeProViR_tutorial.Rmd’ Error: Vignette re-building failed. Execution halted