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This page was generated on 2024-05-20 11:32:15 -0400 (Mon, 20 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4381
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1267/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mobileRNA 1.1.1  (landing page)
Katie Jeynes-Cupper
Snapshot Date: 2024-05-18 09:00:01 -0400 (Sat, 18 May 2024)
git_url: https://git.bioconductor.org/packages/mobileRNA
git_branch: devel
git_last_commit: 04e2774
git_last_commit_date: 2024-05-08 12:02:49 -0400 (Wed, 08 May 2024)
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for mobileRNA on kjohnson1


To the developers/maintainers of the mobileRNA package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mobileRNA
Version: 1.1.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.1.1.tar.gz
StartedAt: 2024-05-19 19:37:57 -0400 (Sun, 19 May 2024)
EndedAt: 2024-05-19 19:43:16 -0400 (Sun, 19 May 2024)
EllapsedTime: 318.6 seconds
RetCode: 0
Status:   OK  
CheckDir: mobileRNA.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.1.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/mobileRNA.Rcheck’
* using R version 4.4.0 Patched (2024-04-24 r86482)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mobileRNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mobileRNA’ version ‘1.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mobileRNA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
RNAdistribution         10.104  0.065  10.174
RNAdicercall             9.611  0.097   9.714
RNAsubset                8.759  0.027   8.793
RNAdifferentialAnalysis  7.950  0.157   8.123
RNAsummary               5.476  0.062   5.538
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

mobileRNA.Rcheck/00install.out

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mobileRNA
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘mobileRNA’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mobileRNA)

Tests output


Example timings

mobileRNA.Rcheck/mobileRNA-Ex.timings

nameusersystemelapsed
RNAattributes0.5720.0210.593
RNAdf2se0.3240.0060.331
RNAdicercall9.6110.0979.714
RNAdifferentialAnalysis7.9500.1578.123
RNAdistribution10.104 0.06510.174
RNAfeatures1.1970.0161.218
RNAimport0.0000.0000.001
RNAmergeAnnotations0.1890.0060.199
RNAmergeGenomes0.0330.0020.035
RNAmobile0.6540.0270.682
RNApopulation2.1510.0242.178
RNAreorder0.2450.0030.252
RNAsequences1.3650.0151.384
RNAsubset8.7590.0278.793
RNAsummary5.4760.0625.538
mRNA_data0.1070.0030.110
mapRNA0.0000.0010.001
plotHeatmap0.7090.0090.718
plotRNAfeatures1.0140.0061.019
plotSampleDistance2.8570.0332.892
plotSamplePCA3.3510.0763.427
sRNA_data0.1900.0030.193