Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:15 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1267/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
mobileRNA 1.1.1 (landing page) Katie Jeynes-Cupper
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the mobileRNA package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: mobileRNA |
Version: 1.1.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.1.1.tar.gz |
StartedAt: 2024-05-19 19:37:57 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 19:43:16 -0400 (Sun, 19 May 2024) |
EllapsedTime: 318.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: mobileRNA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mobileRNA_1.1.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/mobileRNA.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘mobileRNA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mobileRNA’ version ‘1.1.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mobileRNA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed RNAdistribution 10.104 0.065 10.174 RNAdicercall 9.611 0.097 9.714 RNAsubset 8.759 0.027 8.793 RNAdifferentialAnalysis 7.950 0.157 8.123 RNAsummary 5.476 0.062 5.538 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
mobileRNA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mobileRNA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘mobileRNA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mobileRNA)
mobileRNA.Rcheck/mobileRNA-Ex.timings
name | user | system | elapsed | |
RNAattributes | 0.572 | 0.021 | 0.593 | |
RNAdf2se | 0.324 | 0.006 | 0.331 | |
RNAdicercall | 9.611 | 0.097 | 9.714 | |
RNAdifferentialAnalysis | 7.950 | 0.157 | 8.123 | |
RNAdistribution | 10.104 | 0.065 | 10.174 | |
RNAfeatures | 1.197 | 0.016 | 1.218 | |
RNAimport | 0.000 | 0.000 | 0.001 | |
RNAmergeAnnotations | 0.189 | 0.006 | 0.199 | |
RNAmergeGenomes | 0.033 | 0.002 | 0.035 | |
RNAmobile | 0.654 | 0.027 | 0.682 | |
RNApopulation | 2.151 | 0.024 | 2.178 | |
RNAreorder | 0.245 | 0.003 | 0.252 | |
RNAsequences | 1.365 | 0.015 | 1.384 | |
RNAsubset | 8.759 | 0.027 | 8.793 | |
RNAsummary | 5.476 | 0.062 | 5.538 | |
mRNA_data | 0.107 | 0.003 | 0.110 | |
mapRNA | 0.000 | 0.001 | 0.001 | |
plotHeatmap | 0.709 | 0.009 | 0.718 | |
plotRNAfeatures | 1.014 | 0.006 | 1.019 | |
plotSampleDistance | 2.857 | 0.033 | 2.892 | |
plotSamplePCA | 3.351 | 0.076 | 3.427 | |
sRNA_data | 0.190 | 0.003 | 0.193 | |