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This page was generated on 2024-05-20 11:32:15 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1229/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
microSTASIS 1.5.0 (landing page) Pedro Sánchez-Sánchez
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the microSTASIS package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: microSTASIS |
Version: 1.5.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:microSTASIS.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings microSTASIS_1.5.0.tar.gz |
StartedAt: 2024-05-19 19:07:05 -0400 (Sun, 19 May 2024) |
EndedAt: 2024-05-19 19:14:19 -0400 (Sun, 19 May 2024) |
EllapsedTime: 434.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: microSTASIS.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:microSTASIS.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings microSTASIS_1.5.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/microSTASIS.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘microSTASIS/DESCRIPTION’ ... OK * this is package ‘microSTASIS’ version ‘1.5.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘microSTASIS’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘TreeSummarizedExperiment’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... NOTE Rd files without \alias: ‘microSTASIS.Rd’ * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed mSerrorCV 29.222 1.167 15.292 plotmSlinesCV 28.986 1.372 15.370 iterativeClusteringCV 28.373 1.083 14.652 plotmSdynamics 17.711 0.792 13.288 mSmetadataGroups 17.302 0.827 12.718 plotmSheatmap 17.097 0.892 12.669 plotmSscatter 17.164 0.714 12.761 mSpreviz 16.632 0.670 12.225 iterativeClustering 16.394 0.617 12.480 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/microSTASIS.Rcheck/00check.log’ for details.
microSTASIS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL microSTASIS ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘microSTASIS’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘pairedTimes’ with signature ‘"TreeSummarizedExperiment"’: no definition for class “TreeSummarizedExperiment” ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (microSTASIS)
microSTASIS.Rcheck/tests/testthat.Rout
R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(microSTASIS) > > test_check("microSTASIS") [ FAIL 0 | WARN 21 | SKIP 0 | PASS 20 ] [ FAIL 0 | WARN 21 | SKIP 0 | PASS 20 ] > > proc.time() user system elapsed 630.068 15.192 283.669
microSTASIS.Rcheck/microSTASIS-Ex.timings
name | user | system | elapsed | |
iterativeClustering | 16.394 | 0.617 | 12.480 | |
iterativeClusteringCV | 28.373 | 1.083 | 14.652 | |
mSerrorCV | 29.222 | 1.167 | 15.292 | |
mSinternalPairedTimes | 0.030 | 0.002 | 0.032 | |
mSmetadataGroups | 17.302 | 0.827 | 12.718 | |
mSpreviz | 16.632 | 0.670 | 12.225 | |
pairedTimes-methods | 0.032 | 0.004 | 0.036 | |
plotmSdynamics | 17.711 | 0.792 | 13.288 | |
plotmSheatmap | 17.097 | 0.892 | 12.669 | |
plotmSlinesCV | 28.986 | 1.372 | 15.370 | |
plotmSscatter | 17.164 | 0.714 | 12.761 | |