Back to Mac ARM64 build report for BioC 3.20 |
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This page was generated on 2024-05-20 11:32:18 -0400 (Mon, 20 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4381 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1686/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RESOLVE 1.7.0 (landing page) Luca De Sano
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the RESOLVE package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RESOLVE |
Version: 1.7.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.7.0.tar.gz |
StartedAt: 2024-05-20 00:06:44 -0400 (Mon, 20 May 2024) |
EndedAt: 2024-05-20 00:23:20 -0400 (Mon, 20 May 2024) |
EllapsedTime: 995.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RESOLVE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RESOLVE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RESOLVE_1.7.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc-mac-arm64/meat/RESOLVE.Rcheck’ * using R version 4.4.0 Patched (2024-04-24 r86482) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RESOLVE/DESCRIPTION’ ... OK * this is package ‘RESOLVE’ version ‘1.7.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RESOLVE’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed signaturesSignificance 162.404 0.337 163.075 signaturesCV 128.867 0.292 137.344 signaturesDecomposition 89.063 0.215 89.394 signaturesAssignment 51.131 0.116 51.434 getMNVCounts 11.964 0.054 12.022 getIDCounts 6.399 0.395 6.967 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RESOLVE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RESOLVE ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘RESOLVE’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RESOLVE)
RESOLVE.Rcheck/tests/testthat.Rout
R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Sys.setenv("R_TESTS" = "") > > library("testthat") > library("RESOLVE") > > test_check("RESOLVE") [ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ] [ FAIL 0 | WARN 203 | SKIP 0 | PASS 6 ] > > proc.time() user system elapsed 224.588 1.346 226.188
RESOLVE.Rcheck/RESOLVE-Ex.timings
name | user | system | elapsed | |
getCNCounts | 0.016 | 0.003 | 0.019 | |
getIDCounts | 6.399 | 0.395 | 6.967 | |
getMNVCounts | 11.964 | 0.054 | 12.022 | |
getSBSCounts | 1.332 | 0.868 | 4.107 | |
groupsCNPlot | 2.637 | 0.029 | 2.671 | |
groupsCXPlot | 1.734 | 0.052 | 1.788 | |
groupsIDPlot | 2.776 | 0.027 | 2.831 | |
groupsMNVPlot | 4.519 | 0.217 | 4.739 | |
groupsSBSPlot | 3.109 | 0.081 | 3.191 | |
patientsCNPlot | 1.157 | 0.007 | 1.165 | |
patientsCXPlot | 0.552 | 0.004 | 0.557 | |
patientsIDPlot | 1.718 | 0.009 | 1.728 | |
patientsMNVPlot | 1.142 | 0.006 | 1.148 | |
patientsSBSPlot | 0.760 | 0.005 | 0.766 | |
signaturesAssignment | 51.131 | 0.116 | 51.434 | |
signaturesCNPlot | 1.741 | 0.028 | 1.769 | |
signaturesCV | 128.867 | 0.292 | 137.344 | |
signaturesCXPlot | 0.819 | 0.009 | 0.829 | |
signaturesDecomposition | 89.063 | 0.215 | 89.394 | |
signaturesIDPlot | 2.501 | 0.052 | 2.553 | |
signaturesMNVPlot | 1.629 | 0.007 | 1.636 | |
signaturesSBSPlot | 1.088 | 0.005 | 1.094 | |
signaturesSignificance | 162.404 | 0.337 | 163.075 | |