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This page was generated on 2024-06-11 15:42 -0400 (Tue, 11 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4679
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4414
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4441
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2222/2239HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
xcms 4.3.1  (landing page)
Steffen Neumann
Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024)
git_url: https://git.bioconductor.org/packages/xcms
git_branch: devel
git_last_commit: 88bdd816
git_last_commit_date: 2024-05-08 07:43:54 -0400 (Wed, 08 May 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for xcms on merida1

To the developers/maintainers of the xcms package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/xcms.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: xcms
Version: 4.3.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data xcms
StartedAt: 2024-06-09 23:18:52 -0400 (Sun, 09 Jun 2024)
EndedAt: 2024-06-09 23:24:04 -0400 (Sun, 09 Jun 2024)
EllapsedTime: 311.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data xcms
###
##############################################################################
##############################################################################


* checking for file ‘xcms/DESCRIPTION’ ... OK
* preparing ‘xcms’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘LC-MS-feature-grouping.Rmd’ using rmarkdown

Quitting from lines 70-76 [load-data] (LC-MS-feature-grouping.Rmd)
Error: processing vignette 'LC-MS-feature-grouping.Rmd' failed with diagnostics:
there is no package called 'faahKO'
--- failed re-building ‘LC-MS-feature-grouping.Rmd’

--- re-building ‘xcms-direct-injection.Rmd’ using rmarkdown
2024-06-09 23:23:13.585 R[46507:468678031] XType: com.apple.fonts is not accessible.
2024-06-09 23:23:13.585 R[46507:468678031] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘xcms-direct-injection.Rmd’

--- re-building ‘xcms-lcms-ms.Rmd’ using rmarkdown
--- finished re-building ‘xcms-lcms-ms.Rmd’

--- re-building ‘xcms.Rmd’ using rmarkdown

Quitting from lines 30-37 [init] (xcms.Rmd)
Error: processing vignette 'xcms.Rmd' failed with diagnostics:
there is no package called 'faahKO'
--- failed re-building ‘xcms.Rmd’

SUMMARY: processing the following files failed:
  ‘LC-MS-feature-grouping.Rmd’ ‘xcms.Rmd’

Error: Vignette re-building failed.
Execution halted