Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-28 11:41 -0400 (Fri, 28 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4693 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4089 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4407 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4356 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2226/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
xcms 4.3.1 (landing page) Steffen Neumann
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | see weekly results here | ||||||||||||
To the developers/maintainers of the xcms package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/xcms.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: xcms |
Version: 4.3.1 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data xcms |
StartedAt: 2024-06-27 18:58:56 -0400 (Thu, 27 Jun 2024) |
EndedAt: 2024-06-27 18:59:54 -0400 (Thu, 27 Jun 2024) |
EllapsedTime: 58.6 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data xcms ### ############################################################################## ############################################################################## * checking for file ‘xcms/DESCRIPTION’ ... OK * preparing ‘xcms’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘LC-MS-feature-grouping.Rmd’ using rmarkdown Quitting from lines 70-76 [load-data] (LC-MS-feature-grouping.Rmd) Error: processing vignette 'LC-MS-feature-grouping.Rmd' failed with diagnostics: there is no package called 'faahKO' --- failed re-building ‘LC-MS-feature-grouping.Rmd’ --- re-building ‘xcms-direct-injection.Rmd’ using rmarkdown 2024-06-27 18:59:41.733 R[70235:12470929] XType: Using static font registry. --- finished re-building ‘xcms-direct-injection.Rmd’ --- re-building ‘xcms-lcms-ms.Rmd’ using rmarkdown --- finished re-building ‘xcms-lcms-ms.Rmd’ --- re-building ‘xcms.Rmd’ using rmarkdown Quitting from lines 30-37 [init] (xcms.Rmd) Error: processing vignette 'xcms.Rmd' failed with diagnostics: there is no package called 'faahKO' --- failed re-building ‘xcms.Rmd’ SUMMARY: processing the following files failed: ‘LC-MS-feature-grouping.Rmd’ ‘xcms.Rmd’ Error: Vignette re-building failed. Execution halted