Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-05-31 19:30:50 -0400 (Fri, 31 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4669 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4404 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4431 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4384 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2153/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ttgsea 1.13.0 (landing page) Dongmin Jung
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the ttgsea package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ttgsea.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ttgsea |
Version: 1.13.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ttgsea.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings ttgsea_1.13.0.tar.gz |
StartedAt: 2024-05-31 11:39:09 -0400 (Fri, 31 May 2024) |
EndedAt: 2024-05-31 11:43:04 -0400 (Fri, 31 May 2024) |
EllapsedTime: 234.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ttgsea.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ttgsea.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings ttgsea_1.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/ttgsea.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86468 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'ttgsea/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ttgsea' version '1.13.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ttgsea' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fit_model 17.50 1.05 26.25 predict_model 16.94 1.09 24.16 bi_gru 4.95 3.42 43.17 token_vector 2.48 0.10 16.74 text_token 2.16 0.10 15.64 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ttgsea.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL ttgsea ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'ttgsea' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ttgsea)
ttgsea.Rcheck/tests/testthat.Rout
R version 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ttgsea) Loading required package: keras > > test_check("ttgsea") 2024-05-31 11:42:44.721164: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations. To enable the following instructions: SSE SSE2 SSE3 SSE4.1 SSE4.2 AVX AVX2 AVX512F FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags. 1/45 [..............................] - ETA: 3:37 - loss: 1.5891 - pearson_correlation: -0.0071 4/45 [=>............................] - ETA: 0s - loss: 1.5998 - pearson_correlation: -0.0088 7/45 [===>..........................] - ETA: 0s - loss: 1.5629 - pearson_correlation: 0.0684 10/45 [=====>........................] - ETA: 0s - loss: 1.5557 - pearson_correlation: 0.0339 12/45 [=======>......................] - ETA: 0s - loss: 1.5839 - pearson_correlation: 0.0457 14/45 [========>.....................] - ETA: 0s - loss: 1.5409 - pearson_correlation: 0.0385 17/45 [==========>...................] - ETA: 0s - loss: 1.5047 - pearson_correlation: 0.0282 20/45 [============>.................] - ETA: 0s - loss: 1.5056 - pearson_correlation: 0.0447 22/45 [=============>................] - ETA: 0s - loss: 1.5279 - pearson_correlation: 0.0601 24/45 [===============>..............] - ETA: 0s - loss: 1.5402 - pearson_correlation: 0.0526 27/45 [=================>............] - ETA: 0s - loss: 1.5334 - pearson_correlation: 0.0759 30/45 [===================>..........] - ETA: 0s - loss: 1.5567 - pearson_correlation: 0.0982 33/45 [=====================>........] - ETA: 0s - loss: 1.5656 - pearson_correlation: 0.1034 36/45 [=======================>......] - ETA: 0s - loss: 1.5599 - pearson_correlation: 0.1106 39/45 [=========================>....] - ETA: 0s - loss: 1.5570 - pearson_correlation: 0.1209 43/45 [===========================>..] - ETA: 0s - loss: 1.5627 - pearson_correlation: 0.1196 45/45 [==============================] - 6s 24ms/step - loss: 1.5557 - pearson_correlation: 0.1050 1/4 [======>.......................] - ETA: 1s 4/4 [==============================] - 1s 11ms/step 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 0s 47ms/step 1/32 [..............................] - ETA: 0s 9/32 [=======>......................] - ETA: 0s 20/32 [=================>............] - ETA: 0s 30/32 [===========================>..] - ETA: 0s 32/32 [==============================] - 0s 6ms/step 1/32 [..............................] - ETA: 0s 10/32 [========>.....................] - ETA: 0s 20/32 [=================>............] - ETA: 0s 31/32 [============================>.] - ETA: 0s 32/32 [==============================] - 0s 6ms/step 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 0s 31ms/step 1/32 [..............................] - ETA: 0s 10/32 [========>.....................] - ETA: 0s 18/32 [===============>..............] - ETA: 0s 28/32 [=========================>....] - ETA: 0s 32/32 [==============================] - 0s 7ms/step 1/32 [..............................] - ETA: 0s 10/32 [========>.....................] - ETA: 0s 20/32 [=================>............] - ETA: 0s 29/32 [==========================>...] - ETA: 0s 32/32 [==============================] - 0s 7ms/step 1/32 [..............................] - ETA: 0s 11/32 [=========>....................] - ETA: 0s 20/32 [=================>............] - ETA: 0s 30/32 [===========================>..] - ETA: 0s 32/32 [==============================] - 0s 6ms/step 1/32 [..............................] - ETA: 0s 9/32 [=======>......................] - ETA: 0s 19/32 [================>.............] - ETA: 0s 28/32 [=========================>....] - ETA: 0s 32/32 [==============================] - 0s 7ms/step [ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 30.23 4.23 31.84
ttgsea.Rcheck/ttgsea-Ex.timings
name | user | system | elapsed | |
bi_gru | 4.95 | 3.42 | 43.17 | |
bi_lstm | 0.32 | 0.01 | 0.34 | |
fit_model | 17.50 | 1.05 | 26.25 | |
metric_pearson_correlation | 0.02 | 0.00 | 0.01 | |
plot_model | 0.20 | 0.03 | 1.06 | |
predict_model | 16.94 | 1.09 | 24.16 | |
sampling_generator | 0 | 0 | 0 | |
text_token | 2.16 | 0.10 | 15.64 | |
token_vector | 2.48 | 0.10 | 16.74 | |