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This page was generated on 2024-07-16 11:41 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4677
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4416
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4444
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4393
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2100/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidyFlowCore 0.99.2  (landing page)
Timothy Keyes
Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/tidyFlowCore
git_branch: devel
git_last_commit: 0c300a8
git_last_commit_date: 2024-05-03 20:57:56 -0400 (Fri, 03 May 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  


CHECK results for tidyFlowCore on palomino6

To the developers/maintainers of the tidyFlowCore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidyFlowCore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: tidyFlowCore
Version: 0.99.2
Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:tidyFlowCore.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings tidyFlowCore_0.99.2.tar.gz
StartedAt: 2024-07-16 05:01:18 -0400 (Tue, 16 Jul 2024)
EndedAt: 2024-07-16 05:02:56 -0400 (Tue, 16 Jul 2024)
EllapsedTime: 98.2 seconds
RetCode: 0
Status:   OK  
CheckDir: tidyFlowCore.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:tidyFlowCore.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings tidyFlowCore_0.99.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/tidyFlowCore.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'tidyFlowCore/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'tidyFlowCore' version '0.99.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'tidyFlowCore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

tidyFlowCore.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL tidyFlowCore
###
##############################################################################
##############################################################################


* installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'tidyFlowCore' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyFlowCore)

Tests output

tidyFlowCore.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(tidyFlowCore)
> 
> test_check("tidyFlowCore")

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'tidyr'

The following object is masked from 'package:testthat':

    matches

[ FAIL 0 | WARN 0 | SKIP 0 | PASS 104 ]
> 
> proc.time()
   user  system elapsed 
  11.65    0.98   14.76 

Example timings

tidyFlowCore.Rcheck/tidyFlowCore-Ex.timings

nameusersystemelapsed
arrange.flowFrame0.20.00.3
arrange.flowSet0.370.020.47
as_flowFrame000
as_flowSet000
as_tof_tbl0.010.010.03
count.flowFrame0.300.000.38
count.flowSet0.140.000.16
filter.flowFrame0.140.020.17
filter.flowSet0.380.030.43
ggplot.flowFrame0.090.020.15
ggplot.flowSet0.120.010.14
group_by.flowFrame0.350.000.37
make_flowcore_annotated_data_frame000
mutate.flowFrame0.330.020.38
mutate.flowSet0.360.010.46
nest.flowFrame0.350.020.40
pull.flowFrame0.100.010.12
pull.flowSet0.090.020.11
reexports000
rename.flowFrame0.140.020.17
rename.flowSet0.860.030.97
rename_with.flowFrame0.140.020.17
rename_with.flowSet0.380.000.42
select.flowFrame0.120.010.17
select.flowSet0.350.040.42
simulate_cytometry_data0.110.000.13
slice.flowFrame0.170.000.20
slice.flowSet0.360.000.42
slice_head.flowFrame0.140.000.18
slice_head.flowSet0.390.000.45
slice_max.flowFrame0.120.030.17
slice_max.flowSet0.360.000.47
slice_min.flowFrame0.140.000.17
slice_min.flowSet0.360.000.41
slice_sample.flowFrame0.160.010.18
slice_sample.flowSet0.340.020.41
slice_tail.flowFrame1.110.001.36
slice_tail.flowSet0.550.040.63
summarise.flowFrame0.120.000.12
summarise.flowSet0.180.040.22
summarize.flowFrame0.090.000.11
summarize.flowSet0.160.000.15
tof_get_panel000
tof_set_panel000
transmute.flowFrame0.150.000.18
transmute.flowSet0.350.010.40
ungroup.flowSet0.140.020.19
unnest.flowSet0.310.000.34