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This page was generated on 2024-07-24 11:40 -0400 (Wed, 24 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4688
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4284
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4455
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4404
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1987/2248HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spatialHeatmap 2.11.2  (landing page)
Jianhai Zhang
Snapshot Date: 2024-07-23 14:00 -0400 (Tue, 23 Jul 2024)
git_url: https://git.bioconductor.org/packages/spatialHeatmap
git_branch: devel
git_last_commit: 4b89489
git_last_commit_date: 2024-07-23 04:25:13 -0400 (Tue, 23 Jul 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for spatialHeatmap on palomino8

To the developers/maintainers of the spatialHeatmap package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spatialHeatmap.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: spatialHeatmap
Version: 2.11.2
Command: chmod a+r spatialHeatmap -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data spatialHeatmap
StartedAt: 2024-07-23 20:50:34 -0400 (Tue, 23 Jul 2024)
EndedAt: 2024-07-23 20:56:41 -0400 (Tue, 23 Jul 2024)
EllapsedTime: 367.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r spatialHeatmap -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data spatialHeatmap
###
##############################################################################
##############################################################################


* checking for file 'spatialHeatmap/DESCRIPTION' ... OK
* preparing 'spatialHeatmap':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building 'covisualize.Rmd' using rmarkdown
--- finished re-building 'covisualize.Rmd'

--- re-building 'custom_SVGs.Rmd' using rmarkdown
--- finished re-building 'custom_SVGs.Rmd'

--- re-building 'spatialHeatmap.Rmd' using rmarkdown

Quitting from lines 492-493 [unnamed-chunk-22] (spatialHeatmap.Rmd)
Error: processing vignette 'spatialHeatmap.Rmd' failed with diagnostics:
'DESeq2' is not installed!
--- failed re-building 'spatialHeatmap.Rmd'

SUMMARY: processing the following file failed:
  'spatialHeatmap.Rmd'

Error: Vignette re-building failed.
Execution halted