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This page was generated on 2024-05-31 19:29:25 -0400 (Fri, 31 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4669
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4404
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4431
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4384
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1833/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scFeatureFilter 1.25.0  (landing page)
Guillaume Devailly
Snapshot Date: 2024-05-30 18:57:37 -0400 (Thu, 30 May 2024)
git_url: https://git.bioconductor.org/packages/scFeatureFilter
git_branch: devel
git_last_commit: 14c90ee
git_last_commit_date: 2024-04-30 11:03:05 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for scFeatureFilter on nebbiolo2


To the developers/maintainers of the scFeatureFilter package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scFeatureFilter.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: scFeatureFilter
Version: 1.25.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 scFeatureFilter
StartedAt: 2024-05-31 00:23:53 -0400 (Fri, 31 May 2024)
EndedAt: 2024-05-31 00:24:57 -0400 (Fri, 31 May 2024)
EllapsedTime: 64.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 scFeatureFilter
###
##############################################################################
##############################################################################


* checking for file ‘scFeatureFilter/DESCRIPTION’ ... OK
* preparing ‘scFeatureFilter’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Introduction.Rmd’ using rmarkdown

Quitting from lines 250-263 [unnamed-chunk-18] (Introduction.Rmd)
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
failed to open file at '~/.cache/gypsum/bucket/scRNAseq/legacy/2023-12-18/allen/other_data/list_contents.json.gz'
--- failed re-building ‘Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction.Rmd’

Error: Vignette re-building failed.
Execution halted