Kent Riemondy
| Snapshot Date: 2024-07-03 14:00 -0400 (Wed, 03 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/raer |
| git_branch: devel |
| git_last_commit: 27290f6 |
| git_last_commit_date: 2024-04-30 11:52:24 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-04 11:45 -0400 (Thu, 04 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4411 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4413 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4395 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4390 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4407 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1620/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| raer 1.3.0 (landing page) Kent Riemondy
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the raer package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/raer.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: raer |
| Version: 1.3.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL raer |
| StartedAt: 2024-07-03 19:31:21 -0000 (Wed, 03 Jul 2024) |
| EndedAt: 2024-07-03 19:32:26 -0000 (Wed, 03 Jul 2024) |
| EllapsedTime: 65.6 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL raer ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.0/site-library’ * installing *source* package ‘raer’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 10.3.1’ gcc -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c init.c -o init.o gcc -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c plp.c -o plp.o gcc -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c plp_data.c -o plp_data.o gcc -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c plp_utils.c -o plp_utils.o gcc -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c regfile.c -o regfile.o gcc -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c sc-plp.c -o sc-plp.o gcc -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c utils.c -o utils.o gcc -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c ext/bcftools/bcftools-ext.c -o ext/bcftools/bcftools-ext.o gcc -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c ext/htsbox/htsbox-ext.c -o ext/htsbox/htsbox-ext.o gcc -I"/home/biocbuild/R/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4.0/site-library/Rhtslib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c ext/samtools/samtools-ext.c -o ext/samtools/samtools-ext.o gcc -shared -L/home/biocbuild/R/R-4.4.0/lib -L/usr/local/lib -o raer.so init.o plp.o plp_data.o plp_utils.o regfile.o sc-plp.o utils.o ext/bcftools/bcftools-ext.o ext/htsbox/htsbox-ext.o ext/samtools/samtools-ext.o /home/biocbuild/R/R-4.4.0/site-library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/home/biocbuild/R/R-4.4.0/lib -lR installing to /home/biocbuild/R/R-4.4.0/site-library/00LOCK-raer/00new/raer/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (raer)