Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-21 11:35 -0400 (Fri, 21 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4690 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4404 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1339/2242 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
multicrispr 1.15.0 (landing page) Aditya Bhagwat
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the multicrispr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/multicrispr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: multicrispr |
Version: 1.15.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:multicrispr.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings multicrispr_1.15.0.tar.gz |
StartedAt: 2024-06-21 01:26:33 -0400 (Fri, 21 Jun 2024) |
EndedAt: 2024-06-21 01:33:52 -0400 (Fri, 21 Jun 2024) |
EllapsedTime: 438.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: multicrispr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:multicrispr.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings multicrispr_1.15.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/multicrispr.Rcheck’ * using R version 4.4.0 RC (2024-04-16 r86468) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘multicrispr/DESCRIPTION’ ... OK * this is package ‘multicrispr’ version ‘1.15.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘multicrispr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed index_genome 16.861 0.265 17.135 score_ontargets 14.669 1.053 15.652 find_primespacers 13.942 0.737 14.783 find_spacers 9.338 0.687 10.073 up_flank 9.557 0.385 9.813 add_target_matches 8.957 0.633 9.209 add_genome_matches 8.800 0.524 9.285 plot_intervals 7.615 0.357 7.971 extend_for_pe 6.756 0.201 6.997 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
multicrispr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL multicrispr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘multicrispr’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multicrispr)
multicrispr.Rcheck/tests/testthat.Rout
R version 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(multicrispr) > > test_check("multicrispr") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 12.308 0.584 12.882
multicrispr.Rcheck/multicrispr-Ex.timings
name | user | system | elapsed | |
add_genome_matches | 8.800 | 0.524 | 9.285 | |
add_inverse_strand | 1.670 | 0.044 | 1.708 | |
add_seq | 2.042 | 0.104 | 2.146 | |
add_target_matches | 8.957 | 0.633 | 9.209 | |
bed_to_granges | 0.597 | 0.016 | 0.613 | |
char_to_granges | 0.723 | 0.044 | 0.761 | |
double_flank | 2.045 | 0.044 | 2.073 | |
extend_for_pe | 6.756 | 0.201 | 6.997 | |
extend_pe_to_gg | 0.416 | 0.000 | 0.410 | |
extract_matchranges | 2.523 | 0.184 | 2.673 | |
extract_subranges | 0.490 | 0.051 | 0.535 | |
find_gg | 0.954 | 0.060 | 1.008 | |
find_primespacers | 13.942 | 0.737 | 14.783 | |
find_spacers | 9.338 | 0.687 | 10.073 | |
genes_to_granges | 3.255 | 0.216 | 3.472 | |
gr2dt | 0.167 | 0.004 | 0.172 | |
has_been_indexed | 0 | 0 | 0 | |
index_genome | 16.861 | 0.265 | 17.135 | |
index_targets | 2.047 | 0.243 | 2.290 | |
plot_intervals | 7.615 | 0.357 | 7.971 | |
plot_karyogram | 1.070 | 0.088 | 1.158 | |
score_ontargets | 14.669 | 1.053 | 15.652 | |
up_flank | 9.557 | 0.385 | 9.813 | |
write_ranges | 0.156 | 0.007 | 0.164 | |