Vladislav Kim
| Snapshot Date: 2024-07-07 14:00 -0400 (Sun, 07 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/lpsymphony |
| git_branch: devel |
| git_last_commit: 56997c7 |
| git_last_commit_date: 2024-04-30 10:47:18 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-08 11:45 -0400 (Mon, 08 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4643 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4442 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1099/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| lpsymphony 1.33.0 (landing page) Vladislav Kim
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | NA | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the lpsymphony package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/lpsymphony.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: lpsymphony |
| Version: 1.33.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data lpsymphony |
| StartedAt: 2024-07-05 23:49:15 -0000 (Fri, 05 Jul 2024) |
| EndedAt: 2024-07-05 23:49:19 -0000 (Fri, 05 Jul 2024) |
| EllapsedTime: 4.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data lpsymphony
###
##############################################################################
##############################################################################
* checking for file ‘lpsymphony/DESCRIPTION’ ... OK
* preparing ‘lpsymphony’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘lpsymphony’ ...
** using staged installation
CXX is g++ -std=gnu++17
CXX is g++ -std=gnu++14
configure: loading site script /home/biocbuild/tmp/Rtmp0VRnl1/Rbuild2dc5f26c354ebe/lpsymphony/src/SYMPHONY/share/config.site
checking build system type... ./config.guess: unable to guess system type
This script, last modified 2007-05-17, has failed to recognize
the operating system you are using. It is advised that you
download the most up to date version of the config scripts from
http://savannah.gnu.org/cgi-bin/viewcvs/*checkout*/config/config/config.guess
and
http://savannah.gnu.org/cgi-bin/viewcvs/*checkout*/config/config/config.sub
If the version you run (./config.guess) is already up to date, please
send the following data and any information you think might be
pertinent to <config-patches@gnu.org> in order to provide the needed
information to handle your system.
config.guess timestamp = 2007-05-17
uname -m = aarch64
uname -r = 5.10.0-136.72.0.152.oe2203sp1.aarch64
uname -s = Linux
uname -v = #1 SMP Wed Apr 17 18:23:04 CST 2024
/usr/bin/uname -p = aarch64
/bin/uname -X =
hostinfo =
/bin/universe =
/usr/bin/arch -k =
/bin/arch = aarch64
/usr/bin/oslevel =
/usr/convex/getsysinfo =
UNAME_MACHINE = aarch64
UNAME_RELEASE = 5.10.0-136.72.0.152.oe2203sp1.aarch64
UNAME_SYSTEM = Linux
UNAME_VERSION = #1 SMP Wed Apr 17 18:23:04 CST 2024
configure: error: cannot guess build type; you must specify one
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
make[1]: Entering directory '/home/biocbuild/tmp/Rtmp0VRnl1/Rbuild2dc5f26c354ebe/lpsymphony/src/SYMPHONY'
make[1]: *** No targets specified and no makefile found. Stop.
make[1]: Leaving directory '/home/biocbuild/tmp/Rtmp0VRnl1/Rbuild2dc5f26c354ebe/lpsymphony/src/SYMPHONY'
make: *** [Makevars:14: SYMPHONY.ts] Error 2
ERROR: compilation failed for package ‘lpsymphony’
* removing ‘/home/biocbuild/tmp/Rtmp0VRnl1/Rinst2dc5f25f794888/lpsymphony’
-----------------------------------
ERROR: package installation failed