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This page was generated on 2024-05-31 19:29:02 -0400 (Fri, 31 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4669
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4404
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4431
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4384
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1027/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iSEE 2.17.0  (landing page)
Kevin Rue-Albrecht
Snapshot Date: 2024-05-30 18:57:37 -0400 (Thu, 30 May 2024)
git_url: https://git.bioconductor.org/packages/iSEE
git_branch: devel
git_last_commit: 3663ffc
git_last_commit_date: 2024-04-30 11:04:45 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for iSEE on nebbiolo2


To the developers/maintainers of the iSEE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iSEE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: iSEE
Version: 2.17.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 iSEE
StartedAt: 2024-05-30 22:52:00 -0400 (Thu, 30 May 2024)
EndedAt: 2024-05-30 22:53:03 -0400 (Thu, 30 May 2024)
EllapsedTime: 63.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 iSEE
###
##############################################################################
##############################################################################


* checking for file ‘iSEE/DESCRIPTION’ ... OK
* preparing ‘iSEE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘basic.Rmd’ using rmarkdown

Quitting from lines 93-96 [allen-dataset] (basic.Rmd)
Error: processing vignette 'basic.Rmd' failed with diagnostics:
failed to open file at '~/.cache/gypsum/bucket/scRNAseq/legacy/2023-12-18/allen/other_data/list_contents.json.gz'
--- failed re-building ‘basic.Rmd’

--- re-building ‘bigdata.Rmd’ using rmarkdown

Quitting from lines 81-84 [unnamed-chunk-3] (bigdata.Rmd)
Error: processing vignette 'bigdata.Rmd' failed with diagnostics:
failed to open file at '~/.cache/gypsum/bucket/scRNAseq/legacy/2023-12-18/allen/other_data/list_contents.json.gz'
--- failed re-building ‘bigdata.Rmd’

--- re-building ‘configure.Rmd’ using rmarkdown

Quitting from lines 44-55 [setup] (configure.Rmd)
Error: processing vignette 'configure.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘configure.Rmd’

--- re-building ‘custom.Rmd’ using rmarkdown

Quitting from lines 45-56 [setup] (custom.Rmd)
Error: processing vignette 'custom.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘custom.Rmd’

--- re-building ‘ecm.Rmd’ using rmarkdown

Quitting from lines 43-54 [setup] (ecm.Rmd)
Error: processing vignette 'ecm.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘ecm.Rmd’

--- re-building ‘links.Rmd’ using rmarkdown

Quitting from lines 43-54 [setup] (links.Rmd)
Error: processing vignette 'links.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘links.Rmd’

--- re-building ‘voice.Rmd’ using rmarkdown

Quitting from lines 43-54 [setup] (voice.Rmd)
Error: processing vignette 'voice.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘voice.Rmd’

SUMMARY: processing the following files failed:
  ‘basic.Rmd’ ‘bigdata.Rmd’ ‘configure.Rmd’ ‘custom.Rmd’ ‘ecm.Rmd’
  ‘links.Rmd’ ‘voice.Rmd’

Error: Vignette re-building failed.
Execution halted