Back to Multiple platform build/check report for BioC 3.20:   simplified   long
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-06-11 15:40 -0400 (Tue, 11 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4679
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4414
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4441
kjohnson1macOS 13.6.6 Venturaarm644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 849/2239HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
girafe 1.57.0  (landing page)
J. Toedling
Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024)
git_url: https://git.bioconductor.org/packages/girafe
git_branch: devel
git_last_commit: 65a2882
git_last_commit_date: 2024-04-30 10:21:35 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


BUILD BIN results for girafe on palomino4

To the developers/maintainers of the girafe package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/girafe.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: girafe
Version: 1.57.0
Command: rm -rf girafe.buildbin-libdir && mkdir girafe.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=girafe.buildbin-libdir girafe_1.57.0.tar.gz
StartedAt: 2024-06-10 13:46:46 -0400 (Mon, 10 Jun 2024)
EndedAt: 2024-06-10 13:48:33 -0400 (Mon, 10 Jun 2024)
EllapsedTime: 107.6 seconds
RetCode: 0
Status:   OK  
PackageFile: girafe_1.57.0.zip
PackageFileSize: 2.051 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf girafe.buildbin-libdir && mkdir girafe.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=girafe.buildbin-libdir girafe_1.57.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'girafe' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c coverage.cpp -o coverage.o
gcc  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c girafe_init.c -o girafe_init.o
g++ -std=gnu++17 -shared -s -static-libgcc -o girafe.dll tmp.def coverage.o girafe_init.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/meat/girafe.buildbin-libdir/00LOCK-girafe/00new/girafe/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe'
Creating a generic function for 'sample' from package 'base' in package 'girafe'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe'
** testing if installed package can be loaded from final location
No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'girafe' as girafe_1.57.0.zip
* DONE (girafe)