Angelo Velle
| Snapshot Date: 2024-05-29 11:04:14 -0400 (Wed, 29 May 2024) |
| git_url: https://git.bioconductor.org/packages/gINTomics |
| git_branch: devel |
| git_last_commit: c1c358f |
| git_last_commit_date: 2024-04-30 11:56:24 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-05-30 12:35:43 -0400 (Thu, 30 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4669 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4404 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4431 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4384 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 844/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gINTomics 1.1.0 (landing page) Angelo Velle
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the gINTomics package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gINTomics.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gINTomics |
| Version: 1.1.0 |
| Command: rm -rf gINTomics.buildbin-libdir && mkdir gINTomics.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=gINTomics.buildbin-libdir gINTomics_1.1.0.tar.gz |
| StartedAt: 2024-05-30 04:06:55 -0400 (Thu, 30 May 2024) |
| EndedAt: 2024-05-30 04:08:41 -0400 (Thu, 30 May 2024) |
| EllapsedTime: 106.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: gINTomics_1.1.0.zip |
| PackageFileSize: 3.811 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf gINTomics.buildbin-libdir && mkdir gINTomics.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=gINTomics.buildbin-libdir gINTomics_1.1.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'gINTomics' ... ** using staged installation ** R [2024-05-30 04:07:11] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-30 04:07:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:11] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:07:11] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-05-30 04:07:12] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:07:12] [TRACE] [OmnipathR] Contains 6 files. [2024-05-30 04:07:12] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-05-30 04:07:12] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-30 04:07:12] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:12] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:07:12] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-05-30 04:07:12] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-05-30 04:07:12] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:12] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-05-30 04:07:12] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:12] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-05-30 04:07:12] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:12] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-05-30 04:07:12] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:12] [TRACE] [OmnipathR] Cache locked: FALSE ** data ** inst ** byte-compile and prepare package for lazy loading [2024-05-30 04:07:41] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-30 04:07:41] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:42] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:07:42] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-05-30 04:07:42] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:07:42] [TRACE] [OmnipathR] Contains 1 files. [2024-05-30 04:07:42] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-05-30 04:07:42] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-30 04:07:42] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:42] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:07:42] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-05-30 04:07:42] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-05-30 04:07:42] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:42] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-05-30 04:07:42] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:42] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-05-30 04:07:42] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:42] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-05-30 04:07:42] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:07:42] [TRACE] [OmnipathR] Cache locked: FALSE ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2024-05-30 04:08:10] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-30 04:08:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:11] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:08:11] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-05-30 04:08:11] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:08:11] [TRACE] [OmnipathR] Contains 1 files. [2024-05-30 04:08:11] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-05-30 04:08:11] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-30 04:08:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:11] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:08:11] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-05-30 04:08:11] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-05-30 04:08:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:11] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-05-30 04:08:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:11] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-05-30 04:08:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:11] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-05-30 04:08:11] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:11] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2024-05-30 04:08:31] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-30 04:08:31] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:31] [INFO] [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:08:31] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2024-05-30 04:08:31] [TRACE] [OmnipathR] Cache is at `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:08:31] [TRACE] [OmnipathR] Contains 1 files. [2024-05-30 04:08:32] [TRACE] [OmnipathR] Cache is locked: FALSE. [2024-05-30 04:08:32] [TRACE] [OmnipathR] Reading JSON from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR/cache.json` (encoding: UTF-8). [2024-05-30 04:08:32] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:32] [SUCCESS] [OmnipathR] Removing all cache contents from `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`. [2024-05-30 04:08:32] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2024-05-30 04:08:32] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2024-05-30 04:08:32] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:32] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2024-05-30 04:08:32] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:32] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2024-05-30 04:08:32] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:32] [TRACE] [OmnipathR] Reading JSON from `F:/biocbuild/bbs-3.20-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2024-05-30 04:08:32] [TRACE] [OmnipathR] JSON validation successful: TRUE [2024-05-30 04:08:32] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'gINTomics' as gINTomics_1.1.0.zip * DONE (gINTomics)