Arkadiusz Gladki
| Snapshot Date: 2024-05-29 11:04:14 -0400 (Wed, 29 May 2024) |
| git_url: https://git.bioconductor.org/packages/gDRimport |
| git_branch: devel |
| git_last_commit: 8ad4737 |
| git_last_commit_date: 2024-05-29 06:19:11 -0400 (Wed, 29 May 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-05-30 12:36:52 -0400 (Thu, 30 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4669 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4404 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4431 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4384 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 760/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gDRimport 1.3.1 (landing page) Arkadiusz Gladki
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the gDRimport package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDRimport.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gDRimport |
| Version: 1.3.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.3.1.tar.gz |
| StartedAt: 2024-05-30 01:12:17 -0400 (Thu, 30 May 2024) |
| EndedAt: 2024-05-30 01:19:18 -0400 (Thu, 30 May 2024) |
| EllapsedTime: 420.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: gDRimport.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRimport_1.3.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/gDRimport.Rcheck’
* using R version 4.4.0 Patched (2024-04-24 r86482)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gDRimport/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gDRimport’ version ‘1.3.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gDRimport’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
convert_MAE_to_PSet 12.529 0.515 14.181
import_D300 6.305 0.776 7.394
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
gDRimport.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gDRimport ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘gDRimport’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gDRimport)
gDRimport.Rcheck/tests/testthat.Rout
R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(gDRimport)
>
> test_check("gDRimport")
2024-05-30 01:18:13 Building assay index...
2024-05-30 01:18:13 Joining rowData to assayIndex...
2024-05-30 01:18:14 Joining colData to assayIndex...
2024-05-30 01:18:15 Joining assays to assayIndex...
2024-05-30 01:18:17 Setting assayIndex key...
2024-05-30 01:18:17 Building LongTable...
2024-05-30 01:18:20 Building assay index...
2024-05-30 01:18:20 Joining rowData to assayIndex...
2024-05-30 01:18:21 Joining colData to assayIndex...
2024-05-30 01:18:22 Joining assays to assayIndex...
2024-05-30 01:18:24 Setting assayIndex key...
2024-05-30 01:18:25 Building LongTable...
INFO [2024-05-30 01:18:26] Manifest loaded successfully
INFO [2024-05-30 01:18:26] Manifest loaded successfully
INFO [2024-05-30 01:18:26] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-30 01:18:27] Plate 201904190a read; 384 wells
INFO [2024-05-30 01:18:27] Plate 201904190b read; 384 wells
INFO [2024-05-30 01:18:27] Plate 201904190c read; 384 wells
INFO [2024-05-30 01:18:27] Plate 201904190d read; 384 wells
INFO [2024-05-30 01:18:27] Plate 201904190e read; 384 wells
INFO [2024-05-30 01:18:27] Plate 201904190f read; 384 wells
INFO [2024-05-30 01:18:27] File done
INFO [2024-05-30 01:18:27] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-30 01:18:28] Plate 201904197a read; 384 wells
INFO [2024-05-30 01:18:28] Plate 201904197b read; 384 wells
INFO [2024-05-30 01:18:28] Plate 201904197c read; 384 wells
INFO [2024-05-30 01:18:28] Plate 201904197d read; 384 wells
INFO [2024-05-30 01:18:28] Plate 201904197e read; 384 wells
INFO [2024-05-30 01:18:28] Plate 201904197f read; 384 wells
INFO [2024-05-30 01:18:28] File done
INFO [2024-05-30 01:18:28] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-30 01:18:29] Plate 201904190a read; 384 wells
INFO [2024-05-30 01:18:29] Plate 201904190b read; 384 wells
INFO [2024-05-30 01:18:29] Plate 201904190c read; 384 wells
INFO [2024-05-30 01:18:29] Plate 201904190d read; 384 wells
INFO [2024-05-30 01:18:29] Plate 201904190e read; 384 wells
INFO [2024-05-30 01:18:29] Plate 201904190f read; 384 wells
INFO [2024-05-30 01:18:29] File done
INFO [2024-05-30 01:18:29] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-30 01:18:30] Plate 201904197a read; 384 wells
INFO [2024-05-30 01:18:30] Plate 201904197b read; 384 wells
INFO [2024-05-30 01:18:30] Plate 201904197c read; 384 wells
INFO [2024-05-30 01:18:30] Plate 201904197d read; 384 wells
INFO [2024-05-30 01:18:30] Plate 201904197e read; 384 wells
INFO [2024-05-30 01:18:30] Plate 201904197f read; 384 wells
INFO [2024-05-30 01:18:30] File done
INFO [2024-05-30 01:18:30] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-30 01:18:31] Plate 201904190a read; 384 wells
INFO [2024-05-30 01:18:31] Plate 201904190b read; 384 wells
INFO [2024-05-30 01:18:31] Plate 201904190c read; 384 wells
INFO [2024-05-30 01:18:31] Plate 201904190d read; 384 wells
INFO [2024-05-30 01:18:31] Plate 201904190e read; 384 wells
INFO [2024-05-30 01:18:32] Plate 201904190f read; 384 wells
INFO [2024-05-30 01:18:32] File done
INFO [2024-05-30 01:18:32] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-05-30 01:18:32] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-05-30 01:18:32] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-05-30 01:18:33] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-05-30 01:18:34] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-30 01:18:34] Loading Template_7daytreated.xlsx
INFO [2024-05-30 01:18:34] Loading Template_Untreated.xlsx
INFO [2024-05-30 01:18:34] Templates loaded successfully!
INFO [2024-05-30 01:18:34] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-30 01:18:34] Loading Template_7daytreated.xlsx
INFO [2024-05-30 01:18:35] Loading Template_Untreated.xlsx
INFO [2024-05-30 01:18:35] Templates loaded successfully!
INFO [2024-05-30 01:18:35] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-05-30 01:18:35] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-05-30 01:18:35] Templates loaded successfully!
INFO [2024-05-30 01:18:35] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-30 01:18:35] Loading Template_7daytreated.xlsx
INFO [2024-05-30 01:18:35] Templates loaded successfully!
INFO [2024-05-30 01:18:35] Manifest loaded successfully
INFO [2024-05-30 01:18:35] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-30 01:18:36] Loading Template_7daytreated.xlsx
INFO [2024-05-30 01:18:36] Loading Template_Untreated.xlsx
INFO [2024-05-30 01:18:36] Templates loaded successfully!
INFO [2024-05-30 01:18:36] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-30 01:18:37] Plate 201904190a read; 384 wells
INFO [2024-05-30 01:18:37] Plate 201904190b read; 384 wells
INFO [2024-05-30 01:18:37] Plate 201904190c read; 384 wells
INFO [2024-05-30 01:18:37] Plate 201904190d read; 384 wells
INFO [2024-05-30 01:18:37] Plate 201904190e read; 384 wells
INFO [2024-05-30 01:18:37] Plate 201904190f read; 384 wells
INFO [2024-05-30 01:18:37] File done
INFO [2024-05-30 01:18:37] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-05-30 01:18:38] Plate 201904197a read; 384 wells
INFO [2024-05-30 01:18:38] Plate 201904197b read; 384 wells
INFO [2024-05-30 01:18:38] Plate 201904197c read; 384 wells
INFO [2024-05-30 01:18:38] Plate 201904197d read; 384 wells
INFO [2024-05-30 01:18:38] Plate 201904197e read; 384 wells
INFO [2024-05-30 01:18:38] Plate 201904197f read; 384 wells
INFO [2024-05-30 01:18:38] File done
INFO [2024-05-30 01:18:39] Manifest loaded successfully
INFO [2024-05-30 01:18:39] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-05-30 01:18:39] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-05-30 01:18:39] Templates loaded successfully!
INFO [2024-05-30 01:18:39] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-05-30 01:18:39] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-05-30 01:18:40] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-05-30 01:18:40] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-05-30 01:18:41] Manifest loaded successfully
INFO [2024-05-30 01:18:41] Reading Project40.treated.template.xlsx with load_templates_xlsx
INFO [2024-05-30 01:18:41] Loading Project40.treated.template.xlsx
INFO [2024-05-30 01:18:41] Loading Project40.untreated.template.xlsx
INFO [2024-05-30 01:18:42] Templates loaded successfully!
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0109269D00.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0109269D00 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0109269D01.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0109269D01 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0309269D00.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0309269D00 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0309269D01.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0309269D01 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0409269D00.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0409269D00 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0409269D01.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0409269D01 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0509269D00.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0509269D00 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0509269D01.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0509269D01 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0609269D00.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0609269D00 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0609269D01.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0609269D01 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0709269D00.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0709269D00 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0709269D01.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0709269D01 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0809269D00.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0809269D00 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0809269D01.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0809269D01 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0909269D00.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0909269D00 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H0909269D01.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H0909269D01 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1109269D00.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H1109269D00 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1109269D01.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H1109269D01 read; 384 wells
INFO [2024-05-30 01:18:42] File done
INFO [2024-05-30 01:18:42] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1209269D00.csv, sheet 0
INFO [2024-05-30 01:18:42] Plate H1209269D00 read; 384 wells
INFO [2024-05-30 01:18:43] File done
INFO [2024-05-30 01:18:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1209269D01.csv, sheet 0
INFO [2024-05-30 01:18:43] Plate H1209269D01 read; 384 wells
INFO [2024-05-30 01:18:43] File done
INFO [2024-05-30 01:18:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1409269D00.csv, sheet 0
INFO [2024-05-30 01:18:43] Plate H1409269D00 read; 384 wells
INFO [2024-05-30 01:18:43] File done
INFO [2024-05-30 01:18:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/H1409269D01.csv, sheet 0
INFO [2024-05-30 01:18:43] Plate H1409269D01 read; 384 wells
INFO [2024-05-30 01:18:43] File done
INFO [2024-05-30 01:18:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0209269D00.csv, sheet 0
INFO [2024-05-30 01:18:43] Plate K0209269D00 read; 384 wells
INFO [2024-05-30 01:18:43] File done
INFO [2024-05-30 01:18:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0209269D01.csv, sheet 0
INFO [2024-05-30 01:18:43] Plate K0209269D01 read; 384 wells
INFO [2024-05-30 01:18:43] File done
INFO [2024-05-30 01:18:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0809269D00.csv, sheet 0
INFO [2024-05-30 01:18:43] Plate K0809269D00 read; 384 wells
INFO [2024-05-30 01:18:43] File done
INFO [2024-05-30 01:18:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K0809269D01.csv, sheet 0
INFO [2024-05-30 01:18:43] Plate K0809269D01 read; 384 wells
INFO [2024-05-30 01:18:43] File done
INFO [2024-05-30 01:18:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K1009269D00.csv, sheet 0
INFO [2024-05-30 01:18:43] Plate K1009269D00 read; 384 wells
INFO [2024-05-30 01:18:43] File done
INFO [2024-05-30 01:18:43] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data4/K1009269D01.csv, sheet 0
INFO [2024-05-30 01:18:43] Plate K1009269D01 read; 384 wells
INFO [2024-05-30 01:18:43] File done
INFO [2024-05-30 01:18:43] Manifest loaded successfully
INFO [2024-05-30 01:18:43] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-30 01:18:44] Loading Template_7daytreated.xlsx
INFO [2024-05-30 01:18:44] Loading Template_Untreated.xlsx
INFO [2024-05-30 01:18:44] Templates loaded successfully!
INFO [2024-05-30 01:18:44] Manifest loaded successfully
INFO [2024-05-30 01:18:44] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-05-30 01:18:44] Loading Template_7daytreated.xlsx
INFO [2024-05-30 01:18:45] Loading Template_Untreated.xlsx
INFO [2024-05-30 01:18:45] Templates loaded successfully!
INFO [2024-05-30 01:18:45] Manifest loaded successfully
INFO [2024-05-30 01:18:45] Reading Template_trt.tsv with load_templates_tsv
INFO [2024-05-30 01:18:45] Loading Template_trt.tsv
INFO [2024-05-30 01:18:45] Loading Template_untrt.tsv
INFO [2024-05-30 01:18:45] Templates loaded successfully!
INFO [2024-05-30 01:18:45] Reading file /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/gDRimport/extdata/data5/RawData.tsv
WARN [2024-05-30 01:18:49] Metadata field names for cannot contain spaces --> corrected to: Gnumber
WARN [2024-05-30 01:18:49] Header Gnumber in corrected to Gnumber
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 141 ]
>
>
> proc.time()
user system elapsed
97.544 5.611 116.640
gDRimport.Rcheck/gDRimport-Ex.timings
| name | user | system | elapsed | |
| check_metadata_names | 0.140 | 0.018 | 0.168 | |
| convert_LEVEL5_prism_to_gDR_input | 0.027 | 0.004 | 0.033 | |
| convert_LEVEL6_prism_to_gDR_input | 0.026 | 0.005 | 0.033 | |
| convert_MAE_to_PSet | 12.529 | 0.515 | 14.181 | |
| convert_pset_to_df | 0.268 | 0.044 | 0.341 | |
| detect_file_format | 0.639 | 0.056 | 0.817 | |
| getPSet | 0.253 | 0.013 | 0.285 | |
| get_exception_data | 0.015 | 0.005 | 0.022 | |
| get_test_D300_data | 0.003 | 0.002 | 0.005 | |
| get_test_EnVision_data | 0.004 | 0.002 | 0.006 | |
| get_test_Tecan_data | 0.002 | 0.001 | 0.003 | |
| get_test_data | 0.005 | 0.001 | 0.007 | |
| get_test_tsv_data | 0.003 | 0.001 | 0.003 | |
| import_D300 | 6.305 | 0.776 | 7.394 | |
| is_readable_v | 0.003 | 0.001 | 0.003 | |
| load_data | 2.945 | 0.125 | 3.198 | |
| load_manifest | 0.095 | 0.006 | 0.106 | |
| load_results | 2.394 | 0.053 | 2.615 | |
| load_templates | 0.450 | 0.050 | 0.549 | |
| manifest_path-method | 0.004 | 0.001 | 0.005 | |
| parse_D300_xml | 2.594 | 0.029 | 2.758 | |
| read_excel_to_dt | 0.042 | 0.020 | 0.066 | |
| result_path-method | 0.005 | 0.001 | 0.006 | |
| setEnvForPSet | 0.001 | 0.001 | 0.002 | |
| standardize_record_values | 0.001 | 0.000 | 0.001 | |
| template_path-method | 0.004 | 0.001 | 0.005 | |