Multiple platform build/check report for BioC 3.20 - BUILD results for dar on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4688
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4284
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4455
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4404
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for dar on palomino8

To the developers/maintainers of the dar package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dar.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: dar

Version: 1.1.0

Command: chmod a+r dar -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data dar

StartedAt: 2024-07-23 17:46:37 -0400 (Tue, 23 Jul 2024)

EndedAt: 2024-07-23 17:49:22 -0400 (Tue, 23 Jul 2024)

EllapsedTime: 165.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   chmod a+r dar -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data dar
###
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* checking for file 'dar/DESCRIPTION' ... OK
* preparing 'dar':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'article.Rmd' using rmarkdown
[WARNING] Could not parse YAML metadata at line 12 column 1: :6:0: leading empty lines contain more spaces than the first non-empty line in scalar
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata,
  e.g. by using --metadata pagetitle="..." on the command line.
  Falling back to 'article.knit'
--- finished re-building 'article.Rmd'

--- re-building 'dar.Rmd' using rmarkdown

Quitting from lines 155-157 [prep] (dar.Rmd)
Error: processing vignette 'dar.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `purrr::map()`:
ℹ In index: 1.
ℹ With name: RiskGroup2.
Caused by error in `loadNamespace()`:
! there is no package called 'DESeq2'
--- failed re-building 'dar.Rmd'

--- re-building 'data_import.Rmd' using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Data Import", and the latter is "Converting Common Data Formats to Phyloseq and TreeSummarizedExperiment". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building 'data_import.Rmd'

--- re-building 'filtering_subsetting.Rmd' using rmarkdown
--- finished re-building 'filtering_subsetting.Rmd'

--- re-building 'import_export_recipes.Rmd' using rmarkdown
--- finished re-building 'import_export_recipes.Rmd'

SUMMARY: processing the following file failed:
  'dar.Rmd'

Error: Vignette re-building failed.
Execution halted