Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-05-30 12:35:24 -0400 (Thu, 30 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4669 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4404 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4431 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4384 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 234/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
breakpointR 1.23.0 (landing page) David Porubsky
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the breakpointR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/breakpointR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: breakpointR |
Version: 1.23.0 |
Command: chmod a+r breakpointR -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data breakpointR |
StartedAt: 2024-05-29 14:36:00 -0400 (Wed, 29 May 2024) |
EndedAt: 2024-05-29 14:37:22 -0400 (Wed, 29 May 2024) |
EllapsedTime: 81.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r breakpointR -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data breakpointR ### ############################################################################## ############################################################################## * checking for file 'breakpointR/DESCRIPTION' ... OK * preparing 'breakpointR': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'breakpointR.Rnw' using knitr pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "breakpointR.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'breakpointR.Rnw' failed with diagnostics: running 'texi2dvi' on 'breakpointR.tex' failed LaTeX errors: nettes/breakpointR.tex:58: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:70: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:83: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:93: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:109: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:135: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:151: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:171: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:205: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:214: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:232: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... nettes/breakpointR.tex:248: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... --- failed re-building 'breakpointR.Rnw' SUMMARY: processing the following file failed: 'breakpointR.Rnw' Error: Vignette re-building failed. Execution halted