Multiple platform build/check report for BioC 3.20 - CHECK results for biodbChebi on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4688
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4284
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4455
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4404
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbChebi on palomino8

To the developers/maintainers of the biodbChebi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbChebi

Version: 1.11.0

Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbChebi_1.11.0.tar.gz

StartedAt: 2024-07-23 22:21:22 -0400 (Tue, 23 Jul 2024)

EndedAt: 2024-07-23 22:27:36 -0400 (Tue, 23 Jul 2024)

EllapsedTime: 374.0 seconds

RetCode: 0

Status: OK

CheckDir: biodbChebi.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbChebi_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/biodbChebi.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
ChebiConn  4.7   2.72  113.43
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'biodbChebi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-07-23 22:26:15.513][biodb::testContext]
biodb.INFO [2024-07-23 22:26:15.518][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:26:15.520][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-23 22:26:15.523][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:26:15.525][biodb::testContext]
biodb.INFO [2024-07-23 22:26:15.537][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:26:15.541][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-23 22:26:15.556][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:26:15.559][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-23 22:26:15.562][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-23 22:26:15.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.571][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-23 22:26:15.622][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-23 22:26:15.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.631][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-23 22:26:15.633][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-23 22:26:15.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.640][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-23 22:26:15.642][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-23 22:26:15.644][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-23 22:26:15.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.652][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-23 22:26:15.654][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-23 22:26:15.656][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-23 22:26:15.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.666][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-23 22:26:15.669][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-23 22:26:15.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.676][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-23 22:26:15.678][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-23 22:26:15.680][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-23 22:26:15.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.688][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-23 22:26:15.690][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-23 22:26:15.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.697][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-23 22:26:15.699][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-23 22:26:15.701][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-23 22:26:15.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.709][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:26:15.711][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-23 22:26:15.713][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-23 22:26:15.715][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-23 22:26:15.717][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-23 22:26:15.719][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-23 22:26:15.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.727][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-23 22:26:15.729][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-23 22:26:15.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.736][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-23 22:26:15.738][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-23 22:26:15.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.745][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-23 22:26:15.747][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-23 22:26:15.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.755][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-23 22:26:15.757][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-23 22:26:15.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.764][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-23 22:26:15.767][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-23 22:26:15.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.774][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:26:15.776][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-23 22:26:15.782][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-23 22:26:15.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.790][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-23 22:26:15.792][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-23 22:26:15.794][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-23 22:26:15.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:15.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:15.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:15.805][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-23 22:26:15.857][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:15.883][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-23 22:26:15.885][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:15.887][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:26:15.890][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:15.892][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:26:15.894][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:15.897][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:26:15.899][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:26:15.901][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:26:15.903][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:15.905][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-23 22:26:15.907][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:26:15.910][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:15.912][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:15.914][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:26:15.914][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:26:15.914][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:26:15.914][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:26:15.914][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:26:15.916][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:26:15.918][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:15.921][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:15.923][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:26:15.934][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:15.936][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:15.938][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:26:15.941][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:15.943][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:26:15.945][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:26:15.947][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:15.950][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:15.952][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-23 22:26:15.955][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:15.958][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:26:15.960][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:15.962][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:26:15.964][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:15.966][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:26:15.968][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:15.970][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:26:15.972][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:26:15.975][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:26:15.977][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:15.979][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-23 22:26:15.981][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:26:15.983][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:15.985][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:15.987][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:26:15.987][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:26:15.987][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:26:15.987][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:26:15.987][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:26:15.989][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:26:15.991][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:15.992][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:15.994][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:26:15.996][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:15.998][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:16.000][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:26:16.002][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:16.004][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:26:16.006][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:26:16.008][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:16.010][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:16.012][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-23 22:26:16.015][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:16.017][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-23 22:26:16.019][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:16.021][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:26:16.023][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:16.025][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:26:16.027][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:16.029][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:26:16.031][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:26:16.033][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:26:16.035][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:16.037][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-23 22:26:16.039][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:26:16.041][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:16.043][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:16.045][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:16.047][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:26:16.049][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:16.051][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:16.053][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:26:16.055][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:16.057][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:16.059][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:26:16.060][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:16.062][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:26:16.064][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:26:16.066][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:16.068][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:16.070][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-23 22:26:16.073][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:16.075][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:26:16.077][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:16.079][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:26:16.081][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:16.083][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:26:16.085][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:16.087][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:26:16.088][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:26:16.090][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:26:16.092][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:16.094][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-23 22:26:16.096][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:26:16.098][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:16.100][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:16.102][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:16.104][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:26:16.106][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:16.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:16.109][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:26:16.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:16.113][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:16.116][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:26:16.118][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:16.126][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:26:16.128][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:26:16.130][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:16.132][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:16.138][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:26:16.140][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.314][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-23 22:26:16.321][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-23 22:26:16.324][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-23 22:26:16.327][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-23 22:26:16.329][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:26:16.332][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-23 22:26:16.335][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-23 22:26:16.339][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-23 22:26:16.343][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-23 22:26:16.346][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-23 22:26:16.350][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:26:16.353][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-23 22:26:16.356][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-23 22:26:16.359][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-23 22:26:16.363][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-23 22:26:16.366][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-23 22:26:16.369][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-23 22:26:16.372][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-23 22:26:16.375][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:26:16.377][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-23 22:26:16.380][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-23 22:26:16.383][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-23 22:26:16.386][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-23 22:26:16.390][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-23 22:26:16.393][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-23 22:26:16.395][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-23 22:26:16.398][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-23 22:26:16.402][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-23 22:26:16.404][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-23 22:26:16.407][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-23 22:26:16.410][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-23 22:26:16.413][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-23 22:26:16.416][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-23 22:26:16.420][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-23 22:26:16.422][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-23 22:26:16.425][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-23 22:26:16.428][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-23 22:26:16.431][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-23 22:26:16.434][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-23 22:26:16.437][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-23 22:26:16.441][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-23 22:26:16.445][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-23 22:26:16.448][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-23 22:26:16.451][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-23 22:26:16.454][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-23 22:26:16.457][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-23 22:26:16.461][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-23 22:26:16.464][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-23 22:26:16.467][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-23 22:26:16.470][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-23 22:26:16.473][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-23 22:26:16.476][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-23 22:26:16.479][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-23 22:26:16.482][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-23 22:26:16.485][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-23 22:26:16.488][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-23 22:26:16.491][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-23 22:26:16.494][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-23 22:26:16.497][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-23 22:26:16.500][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-23 22:26:16.503][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-23 22:26:16.506][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-23 22:26:16.509][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-23 22:26:16.512][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-23 22:26:16.515][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-23 22:26:16.518][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-23 22:26:16.521][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:26:16.524][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:26:16.527][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-23 22:26:16.531][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-23 22:26:16.534][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-23 22:26:16.537][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-23 22:26:16.540][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-23 22:26:16.542][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-23 22:26:16.545][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-23 22:26:16.548][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-23 22:26:16.550][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-23 22:26:16.553][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-23 22:26:16.556][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-23 22:26:16.559][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-23 22:26:16.561][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-23 22:26:16.564][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-23 22:26:16.566][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-23 22:26:16.615][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-23 22:26:16.619][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:26:16.625][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:26:16.627][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.631][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:16.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:16.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:16.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:16.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:16.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:16.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:16.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:17.003][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-23 22:26:17.020][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-23 22:26:17.024][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:17.026][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-23 22:26:17.028][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:17.030][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:26:17.032][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:17.035][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:26:17.037][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:17.039][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-23 22:26:17.041][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-23 22:26:17.043][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:26:17.045][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:17.047][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-23 22:26:17.049][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-23 22:26:17.052][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-23 22:26:17.055][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:17.057][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:26:17.057][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:26:17.057][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:26:17.059][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-23 22:26:17.061][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:17.063][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:17.064][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:26:17.066][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:17.068][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:17.070][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:26:17.072][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-23 22:26:17.072][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-23 22:26:17.074][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:26:17.076][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:26:17.078][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:17.080][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-23 22:26:17.080][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-23 22:26:17.091][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:26:17.094][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:26:17.098][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-23 22:26:17.100][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:26:17.103][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:26:17.106][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:26:17.141][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-23 22:26:17.144][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-23 22:26:17.150][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-23 22:26:17.156][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-23 22:26:17.163][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:26:17.165][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:26:17.168][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-23 22:26:17.170][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-23 22:26:17.188][biodb::testThat]
biodb.INFO [2024-07-23 22:26:17.191][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-07-23 22:26:17.193][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:17.195][biodb::testThat]
biodb.TRACE[2024-07-23 22:26:17.230][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-07-23 22:26:17.234][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:17.239][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:17.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:17.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:17.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:17.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:17.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:17.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:17.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:17.301][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.311][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.347][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:17.350][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:17.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.355][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:17.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:17.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.409][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:17.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:17.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.415][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:17.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:17.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:17.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:17.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.433][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:17.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:17.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.444][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:17.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:17.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.451][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:17.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:17.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.463][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:17.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:17.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.469][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.472][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:17.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:17.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.480][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:17.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:17.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.487][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.489][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:17.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:17.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:17.500][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:17.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.503][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:17.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:17.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.514][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:17.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:17.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.520][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:17.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.583][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:17.585][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:17.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.589][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.592][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.600][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:17.602][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:17.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.606][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:17.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:17.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:17.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:17.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:17.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:17.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:17.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:17.750][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-07-23 22:26:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:17.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:17.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:17.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:17.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:17.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:17.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:17.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:17.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:17.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:17.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:17.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:26:17.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:26:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:26:17.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:26:17.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.867][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-23 22:26:17.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-23 22:26:17.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.875][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-23 22:26:17.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-23 22:26:17.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:17.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:17.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:17.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:17.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:18.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:18.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:18.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:18.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:18.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:18.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:18.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:18.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:18.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.283][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:18.286][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:18.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.291][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:18.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:18.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.384][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:18.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:18.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:18.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:18.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.446][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:18.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:18.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.452][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:18.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:18.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:18.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:18.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.495][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:18.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:18.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:18.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:18.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.512][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:18.517][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:18.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.521][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:18.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:18.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:18.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:18.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:18.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:18.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:18.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.632][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:18.634][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:18.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.638][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:18.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:18.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:18.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:18.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:18.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:18.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:18.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.783][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:18.785][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:18.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.790][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:18.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:18.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:18.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:18.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:18.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:18.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.988][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:18.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:18.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:18.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:18.996][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:18.999][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:19.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.003][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.005][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:19.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:19.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.042][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-23 22:26:19.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:19.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-23 22:26:19.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:19.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.060][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-23 22:26:19.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:19.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.069][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-23 22:26:19.071][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:19.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.075][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.077][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-23 22:26:19.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.107][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:19.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:19.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.117][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:19.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:19.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:19.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.135][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:19.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:19.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.141][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.143][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:19.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:19.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:19.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:19.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:19.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:19.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:19.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:19.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:19.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:19.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.202][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:19.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:19.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:19.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:19.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:19.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:19.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:19.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:19.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.552][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:19.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:19.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:19.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:19.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:19.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:19.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:19.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.816][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:19.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:19.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.822][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:19.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:19.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.882][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:19.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:19.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:19.974][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:19.989][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:19.996][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:19.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:20.058][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:20.070][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:20.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:20.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:20.077][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:20.089][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:20.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:20.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:20.097][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:20.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:20.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:20.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:20.117][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:20.176][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:20.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:20.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:20.183][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:20.194][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:20.197][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:20.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:20.240][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:20.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:20.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:20.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:20.259][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:20.318][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-23 22:26:20.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:20.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:20.326][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:20.403][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:20.406][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:20.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:20.410][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:20.464][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:20.467][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:20.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:20.473][ef$get] fields variable is a list.
biodb.INFO [2024-07-23 22:26:20.523][biodb::testThat]
biodb.INFO [2024-07-23 22:26:20.526][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-23 22:26:20.528][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:20.531][biodb::testThat]
biodb.DEBUG[2024-07-23 22:26:20.594][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-07-23 22:26:20.604][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:31.840][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-07-23 22:26:31.842][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:31.845][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-07-23 22:26:31.853][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:31.874][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:31.875][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:31.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:31.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:31.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:31.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:31.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:31.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:31.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:31.893][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:31.894][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:31.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.897][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:31.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.917][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:31.918][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:31.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.921][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.927][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:31.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:31.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.931][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:31.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:31.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.943][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:31.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:31.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:31.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.959][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:31.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:31.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:31.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:31.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.976][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:31.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.987][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:31.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:31.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:31.993][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:31.995][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:32.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.004][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:32.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:32.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:32.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.021][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:32.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:32.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.038][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.050][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:32.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:32.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.056][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:32.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:32.069][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:32.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.073][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:32.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:32.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:32.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:32.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:32.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:32.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:32.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:32.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:32.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:32.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:32.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:32.145][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-07-23 22:26:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-23 22:26:32.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-23 22:26:32.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-23 22:26:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-23 22:26:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-23 22:26:32.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-23 22:26:32.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-23 22:26:32.191][biodb::testThat]
biodb.INFO [2024-07-23 22:26:32.193][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-23 22:26:32.195][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:32.197][biodb::testThat]
biodb.TRACE[2024-07-23 22:26:32.203][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:32.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:32.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.209][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:32.212][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-07-23 22:26:32.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:32.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:32.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:32.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:32.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:32.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:32.296][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-07-23 22:26:32.304][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-23 22:26:32.336][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:32.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-23 22:26:32.365][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:32.369][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-23 22:26:38.544][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:38.548][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:38.550][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-23 22:26:38.551][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:38.565][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-23 22:26:38.567][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-07-23 22:26:38.585][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:38.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:38.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:38.589][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:38.590][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:38.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:38.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:38.594][ef$get] fields variable is a list.
biodb.INFO [2024-07-23 22:26:38.601][biodb::testThat]
biodb.INFO [2024-07-23 22:26:38.602][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-07-23 22:26:38.603][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:38.604][biodb::testThat]
biodb.TRACE[2024-07-23 22:26:39.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:39.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:39.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:39.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:39.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:39.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:39.221][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:39.225][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:39.227][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-23 22:26:39.229][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:39.231][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-07-23 22:26:39.259][biodb::testThat]
biodb.INFO [2024-07-23 22:26:39.260][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-07-23 22:26:39.261][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:39.262][biodb::testThat]
biodb.TRACE[2024-07-23 22:26:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:39.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:39.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:39.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:39.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:39.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:39.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:39.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:39.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:26:39.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:26:39.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.353][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:26:39.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:26:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.359][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-23 22:26:39.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-23 22:26:39.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-23 22:26:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-23 22:26:39.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:39.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:39.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:39.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:39.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:39.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:26:39.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:26:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-23 22:26:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-23 22:26:39.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.456][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-23 22:26:39.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-23 22:26:39.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:39.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-23 22:26:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-23 22:26:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-23 22:26:39.486][biodb::testThat]
biodb.INFO [2024-07-23 22:26:39.488][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-23 22:26:39.490][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:39.493][biodb::testThat]
biodb.INFO [2024-07-23 22:26:39.555][biodb::testThat]
biodb.INFO [2024-07-23 22:26:39.558][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-23 22:26:39.560][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:39.562][biodb::testThat]
biodb.INFO [2024-07-23 22:26:39.640][biodb::testThat]
biodb.INFO [2024-07-23 22:26:39.643][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-23 22:26:39.645][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:39.647][biodb::testThat]
biodb.DEBUG[2024-07-23 22:26:39.654][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-07-23 22:26:40.394][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-07-23 22:26:41.320][biodb::testThat]
biodb.INFO [2024-07-23 22:26:41.321][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-23 22:26:41.322][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:41.324][biodb::testThat]
biodb.DEBUG[2024-07-23 22:26:41.743][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-07-23 22:26:42.172][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:42.174][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:42.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:42.176][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:42.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:42.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:42.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:42.181][ef$get] fields variable is a list.
biodb.INFO [2024-07-23 22:26:42.184][biodb::testThat]
biodb.INFO [2024-07-23 22:26:42.185][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-07-23 22:26:42.186][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:42.187][biodb::testThat]
biodb.TRACE[2024-07-23 22:26:42.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:42.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:42.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:42.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:42.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:42.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:42.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:42.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:43.622][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:43.628][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:43.632][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-23 22:26:43.635][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:43.638][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-23 22:26:43.751][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:43.755][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:43.756][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-23 22:26:43.758][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:43.760][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-07-23 22:26:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:26:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:26:43.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:43.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:43.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:43.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:43.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:43.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:43.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:43.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:43.823][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:43.828][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:43.830][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-23 22:26:43.832][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:43.845][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-23 22:26:43.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:43.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:43.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:43.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:43.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:43.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:43.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:43.862][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-07-23 22:26:43.906][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:43.908][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-07-23 22:26:43.910][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:43.922][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2024-07-23 22:26:43.924][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:43.925][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:43.927][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:43.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:43.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:43.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:43.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:43.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:43.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:43.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:43.944][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:43.945][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:43.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.947][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:43.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:43.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.954][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:43.955][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:43.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.957][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:43.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:43.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.964][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:43.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:43.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.967][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:43.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:43.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:43.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.978][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:43.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:43.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:43.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.993][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:43.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:43.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:43.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:43.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:44.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:44.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.003][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.004][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:44.005][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.008][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.018][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.024][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:44.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:44.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.028][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:44.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:44.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.034][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:44.036][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:44.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.038][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:44.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:44.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:44.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:44.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.049][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:44.109][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-07-23 22:26:44.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:44.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:44.138][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:44.140][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-23 22:26:44.142][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:44.154][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-23 22:26:44.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:44.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:44.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:44.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:44.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:44.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:44.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:44.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:44.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:44.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:44.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:44.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:44.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:44.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:44.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:44.210][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-07-23 22:26:44.211][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:44.213][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-07-23 22:26:44.215][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:44.232][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2024-07-23 22:26:44.233][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:44.235][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:44.236][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:44.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:44.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:44.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:44.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:44.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:44.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:44.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:44.253][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.257][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.263][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:44.264][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:44.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.267][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.268][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:44.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:44.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.273][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:44.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:44.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.277][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:44.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:44.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.283][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:44.285][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:44.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.287][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:44.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:44.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.293][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:44.295][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:44.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.297][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:44.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:44.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.303][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:44.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:44.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.307][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.308][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:44.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.312][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.322][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.329][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:44.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:44.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.332][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:44.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:44.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.339][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:44.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:44.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.343][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:44.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.354][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:44.355][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:44.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.357][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:44.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:44.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:44.413][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-07-23 22:26:44.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:44.454][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:44.458][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:44.459][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-23 22:26:44.461][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:44.463][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-23 22:26:44.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:44.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:44.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:44.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:44.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:44.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:44.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:44.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:44.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:44.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:44.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:44.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:44.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:44.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:44.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:44.513][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-07-23 22:26:44.514][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:44.516][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-07-23 22:26:44.519][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:44.532][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2024-07-23 22:26:44.534][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:44.535][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:44.537][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:44.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:44.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:44.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:44.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:44.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:44.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:44.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:44.554][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.557][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.564][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:44.565][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:44.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.568][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.569][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:44.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:44.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.573][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.574][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:44.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:44.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.578][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.580][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:44.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:44.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.583][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.585][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:44.586][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:44.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.589][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.590][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:44.591][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.594][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.597][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.599][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.601][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:44.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:44.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.610][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:44.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.616][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:44.617][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:44.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.620][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:44.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:44.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:44.628][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:44.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.630][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:44.682][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-07-23 22:26:44.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:44.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:44.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:44.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:44.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:44.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:44.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:44.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:44.747][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-07-23 22:26:44.748][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:44.750][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-07-23 22:26:44.753][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:44.767][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2024-07-23 22:26:44.768][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:44.770][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:44.772][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:44.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:44.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:44.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:44.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:44.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:44.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:44.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:44.789][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.793][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.799][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:44.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:44.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.803][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.804][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:44.806][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:44.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.808][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:44.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:44.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.813][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:44.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:44.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.818][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.820][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:44.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:44.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.823][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.825][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:44.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.828][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.830][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.831][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:44.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.834][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.835][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:44.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:44.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:44.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:44.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.846][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:44.847][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:44.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.850][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.856][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:44.858][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:44.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.860][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:44.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:44.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:44.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:44.918][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-07-23 22:26:44.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:44.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:44.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:44.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:44.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:44.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:44.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:44.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:44.958][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-07-23 22:26:44.960][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:44.962][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-07-23 22:26:44.964][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:44.978][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2024-07-23 22:26:44.980][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:44.981][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:44.983][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:44.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:44.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:44.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:44.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:44.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:44.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:44.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:45.000][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.004][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.010][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:45.011][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:45.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.014][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.015][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:45.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:45.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.024][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.026][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:45.027][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:45.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.030][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.035][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.036][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.038][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.040][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.041][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:45.043][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.045][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.048][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.050][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.052][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:45.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:45.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.055][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:45.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.062][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:45.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:45.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.066][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.072][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:45.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:45.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.076][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:45.127][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-07-23 22:26:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:45.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:45.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:45.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:45.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:45.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:45.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:45.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:45.172][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-07-23 22:26:45.173][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:45.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-07-23 22:26:45.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:45.190][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2024-07-23 22:26:45.192][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:45.193][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:45.195][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:45.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:45.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:45.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:45.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:45.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:45.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:45.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:45.211][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.215][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.222][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:45.223][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:45.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.227][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:45.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:45.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.232][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:45.233][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:45.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.236][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:45.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:45.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:45.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:45.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.246][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:45.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:45.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.262][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.266][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.278][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:45.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.282][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.283][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:45.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.292][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.298][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:45.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:45.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.302][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:45.310][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:45.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.312][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:45.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:45.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.319][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:45.320][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:45.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.322][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:45.377][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-07-23 22:26:45.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:45.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:45.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:45.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:45.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:45.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:45.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:45.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:45.412][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-07-23 22:26:45.413][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:45.415][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-07-23 22:26:45.418][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:45.430][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2024-07-23 22:26:45.432][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:45.433][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:45.435][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:45.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:45.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:45.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:45.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:45.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:45.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:45.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:45.452][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.455][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.462][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:45.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:45.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.465][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.472][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:45.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:45.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.475][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:45.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:45.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:45.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.486][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:45.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.496][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.502][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.506][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.507][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.512][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:45.513][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.516][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.517][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.531][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.538][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:45.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:45.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.541][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:45.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.548][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:45.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:45.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.552][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.553][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:45.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:45.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:45.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:45.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.562][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:45.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:45.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:45.617][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-07-23 22:26:45.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:45.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:45.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:45.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:45.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:45.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:45.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:45.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:45.652][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-07-23 22:26:45.654][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:45.655][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-07-23 22:26:45.658][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:45.671][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2024-07-23 22:26:45.672][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:45.673][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:45.675][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:45.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:45.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:45.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:45.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:45.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:45.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:45.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:45.692][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.696][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.702][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:45.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:45.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.706][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:45.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:45.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.712][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:45.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:45.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.716][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:45.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:45.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:45.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.726][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:45.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:45.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.734][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.736][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.742][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.743][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.746][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.747][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:45.749][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.751][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.761][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.767][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:45.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:45.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.771][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:45.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.783][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:45.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:45.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.787][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.788][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:45.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:45.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:45.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.797][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:45.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:45.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:45.852][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-07-23 22:26:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:45.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:45.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:45.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:45.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:45.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:45.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:45.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:45.883][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-07-23 22:26:45.884][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:45.886][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-07-23 22:26:45.889][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:45.904][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2024-07-23 22:26:45.905][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:45.907][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:45.909][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:45.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:45.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:45.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:45.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:45.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:45.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:45.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:45.931][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.932][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.935][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.941][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:45.942][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:45.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.945][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.951][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:45.952][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:45.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.955][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:45.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:45.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:45.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:45.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.965][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:45.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:45.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.973][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.975][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:45.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.981][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.983][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:45.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.985][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.987][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:45.988][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.990][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:45.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:45.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.000][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.007][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:46.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:46.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.017][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:46.018][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:46.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.027][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:46.028][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:46.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.035][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:46.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:46.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:46.091][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-07-23 22:26:46.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:46.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:46.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:46.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:46.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:46.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:46.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:46.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:46.121][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-07-23 22:26:46.123][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:46.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-07-23 22:26:46.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:46.140][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2024-07-23 22:26:46.142][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:46.144][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:46.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:46.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:46.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:46.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:46.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:46.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:46.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:46.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:46.165][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.175][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.182][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:46.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:46.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.186][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:46.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.193][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:46.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:46.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.196][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:46.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:46.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.207][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:46.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:46.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.215][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.217][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.224][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:46.225][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:46.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.227][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.229][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:46.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.232][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:46.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.243][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.249][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:46.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:46.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.253][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:46.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:46.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:46.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:46.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.263][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.265][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:46.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.270][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:46.271][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:46.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:46.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:46.336][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-07-23 22:26:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:46.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:46.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:46.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:46.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:46.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:46.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:46.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:46.367][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-07-23 22:26:46.368][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:46.370][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-07-23 22:26:46.373][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:46.387][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2024-07-23 22:26:46.388][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:46.390][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:46.391][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:46.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:46.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:46.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:46.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:46.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:46.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:46.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:46.408][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.412][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.418][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:46.420][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:46.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.422][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:46.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:46.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.434][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:46.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:46.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.438][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:46.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:46.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:46.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:46.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.448][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:46.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:46.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.456][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.458][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:46.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:46.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.468][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.469][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:46.471][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.473][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.474][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:46.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.483][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.489][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:46.491][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:46.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.493][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.499][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:46.501][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:46.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.503][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.509][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:46.511][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:46.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.513][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:46.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:46.574][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-07-23 22:26:46.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:46.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:46.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:46.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:46.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:46.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:46.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:46.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:46.604][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-07-23 22:26:46.605][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:46.607][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-07-23 22:26:46.611][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:46.624][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2024-07-23 22:26:46.625][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:46.627][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:46.628][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:46.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:46.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:46.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:46.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:46.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:46.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:46.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:46.645][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.656][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:46.657][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:46.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.659][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:46.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:46.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.666][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:46.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:46.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.669][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:46.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:46.682][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:46.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.685][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:46.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:46.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.691][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.695][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.701][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:46.703][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:46.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.705][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.706][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:46.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.710][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.711][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:46.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.720][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.726][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:46.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:46.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.730][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:46.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:46.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.737][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:46.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:46.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.740][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.742][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:46.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:46.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.746][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:46.748][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:46.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.750][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:46.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:46.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:46.811][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-07-23 22:26:46.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:46.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:46.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:46.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:46.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:46.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:46.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:46.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:46.840][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-07-23 22:26:46.842][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:46.844][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-07-23 22:26:46.847][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:46.861][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2024-07-23 22:26:46.862][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:46.864][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:46.865][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:46.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:46.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:46.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:46.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:46.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:46.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:46.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:46.882][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.886][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.892][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:46.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:46.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.896][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:46.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:46.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.902][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:46.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:46.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.906][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:46.914][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:46.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.916][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.917][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:46.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.921][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.922][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:46.924][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:46.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.931][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.933][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:46.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.937][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.938][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:46.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:46.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.944][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.947][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.953][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:46.955][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:46.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.957][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.963][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:46.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:46.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.967][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.969][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:46.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:46.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.977][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:46.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:46.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:46.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:46.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:47.027][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-07-23 22:26:47.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:47.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:47.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:47.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:47.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:47.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:47.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:47.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:47.063][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-07-23 22:26:47.064][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:47.066][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-07-23 22:26:47.068][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:47.082][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2024-07-23 22:26:47.083][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:47.085][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:47.086][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:47.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:47.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:47.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:47.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:47.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:47.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:47.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:47.103][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.107][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.115][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:47.116][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:47.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.119][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:47.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.126][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:47.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:47.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.130][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:47.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:47.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.140][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.142][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.143][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.145][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.147][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:47.148][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:47.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.150][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.152][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:47.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.155][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.157][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.162][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.165][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.172][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:47.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:47.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.175][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.188][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:47.189][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:47.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:47.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:47.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.198][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:47.199][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:47.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.202][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:47.252][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-07-23 22:26:47.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:47.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:47.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:47.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:47.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:47.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:47.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:47.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:47.282][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-07-23 22:26:47.284][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:47.286][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-07-23 22:26:47.289][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:47.303][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2024-07-23 22:26:47.305][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:47.307][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:47.308][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:47.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:47.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:47.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:47.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:47.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:47.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:47.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:47.332][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.333][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.335][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.342][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:47.343][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:47.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.345][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.352][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:47.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:47.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.355][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:47.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:47.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:47.363][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:47.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.366][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:47.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:47.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.372][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.373][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.376][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.382][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:47.383][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:47.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.385][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.387][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:47.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.391][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.392][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:47.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.397][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.398][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.401][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.407][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:47.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:47.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.411][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:47.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.417][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:47.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:47.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.421][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:47.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.427][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:47.428][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:47.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.437][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:47.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:47.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:47.493][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-07-23 22:26:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:47.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:47.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:47.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:47.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:47.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:47.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:47.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:47.526][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-07-23 22:26:47.527][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:47.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-07-23 22:26:47.531][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:47.544][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2024-07-23 22:26:47.545][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:47.547][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:47.548][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:47.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:47.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:47.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:47.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:47.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:47.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:47.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:47.565][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.574][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.581][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:47.582][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:47.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.584][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.586][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:47.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:47.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.591][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:47.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:47.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.594][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:47.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:47.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.602][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:47.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.606][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:47.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:47.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.613][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.614][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.616][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.623][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:47.624][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:47.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.626][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.628][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:47.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.631][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.633][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:47.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.641][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.648][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:47.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:47.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.651][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:47.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:47.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.658][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:47.659][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:47.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.662][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.663][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:47.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:47.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.668][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:47.669][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:47.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.672][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:47.733][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-07-23 22:26:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:47.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:47.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:47.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:47.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:47.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:47.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:47.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:47.763][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-07-23 22:26:47.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:47.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-07-23 22:26:47.768][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:47.786][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2024-07-23 22:26:47.787][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:47.789][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:47.790][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:47.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:47.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:47.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:47.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:47.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:47.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:47.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:47.808][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.809][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.811][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.818][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:47.819][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:47.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.821][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:47.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.833][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:47.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:47.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.837][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:47.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:47.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:47.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:47.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.848][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:47.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:47.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.858][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:47.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.864][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:47.865][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:47.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.868][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.869][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:47.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.873][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.874][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.883][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:47.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.889][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:47.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:47.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.892][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:47.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:47.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.899][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:47.900][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:47.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.902][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:47.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:47.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:47.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:47.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.912][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:47.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:47.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:47.976][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-07-23 22:26:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:47.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:47.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:47.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:47.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:47.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:48.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:48.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:48.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:48.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:48.279][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-07-23 22:26:48.281][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:48.283][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-07-23 22:26:48.285][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:48.298][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2024-07-23 22:26:48.300][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:48.301][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:48.303][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:48.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:48.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:48.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:48.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:48.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:48.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:48.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:48.321][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.324][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.331][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:48.332][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:48.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.335][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.336][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:48.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.341][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:48.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:48.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.345][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:48.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:48.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:48.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:48.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.361][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:48.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.370][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.373][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.379][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:48.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:48.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.383][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.385][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:48.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.389][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.390][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:48.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.399][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.406][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:48.407][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:48.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.410][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.417][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:48.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:48.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.420][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:48.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:48.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.427][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:48.428][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:48.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.431][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:48.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:48.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:48.498][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-07-23 22:26:48.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:48.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:48.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:48.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:48.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:48.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:48.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:48.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:48.529][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-07-23 22:26:48.531][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:48.533][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-07-23 22:26:48.535][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:48.547][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2024-07-23 22:26:48.549][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:48.552][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:48.554][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:48.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:48.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:48.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:48.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:48.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:48.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:48.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:48.573][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.577][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.583][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:48.585][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:48.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.587][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:48.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.594][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:48.595][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:48.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.597][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:48.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:48.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.608][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:48.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.618][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:48.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:48.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.634][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.636][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:48.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.641][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:48.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.650][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.656][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:48.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.660][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:48.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:48.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.667][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:48.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:48.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.670][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:48.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:48.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:48.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.680][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:48.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:48.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:48.736][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-07-23 22:26:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:48.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:48.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:48.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:48.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:48.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:48.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:48.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:48.772][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-07-23 22:26:48.773][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:48.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-07-23 22:26:48.777][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:48.791][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2024-07-23 22:26:48.793][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:48.794][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:48.796][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:48.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:48.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:48.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:48.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:48.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:48.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:48.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:48.812][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.816][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.822][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:48.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:48.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.826][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:48.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:48.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.833][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:48.834][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:48.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.836][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:48.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:48.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:48.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:48.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.847][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.853][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.854][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.857][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:48.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:48.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:48.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.867][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.868][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:48.869][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.877][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.879][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:48.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.888][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:48.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.894][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:48.896][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:48.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.905][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:48.906][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:48.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.908][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.910][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:48.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:48.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.915][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:48.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:48.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.918][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:48.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:48.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:48.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:48.974][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-07-23 22:26:48.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:48.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:48.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:48.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:48.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:49.010][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-07-23 22:26:49.011][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:49.013][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-07-23 22:26:49.015][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:49.028][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2024-07-23 22:26:49.029][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:49.031][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:49.033][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:49.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:49.049][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:49.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:49.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.053][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:49.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:49.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.060][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:49.061][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:49.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.063][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.065][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:49.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:49.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.070][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:49.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:49.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.073][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:49.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:49.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:49.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.084][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:49.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:49.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:49.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.094][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:49.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.100][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:49.101][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:49.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.104][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.105][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:49.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.109][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:49.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:49.116][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:49.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.119][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.131][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:49.133][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:49.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.135][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:49.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:49.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.142][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:49.143][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:49.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.145][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.147][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:49.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:49.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.152][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:49.153][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:49.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.155][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:49.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:49.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:49.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:49.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:49.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:49.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:49.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:49.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:49.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:49.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:49.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:49.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:49.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:49.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:49.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:49.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:49.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:49.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.212][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-07-23 22:26:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.259][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:49.262][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:49.264][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-23 22:26:49.265][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:49.267][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-23 22:26:49.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:49.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:49.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:49.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:49.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:49.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:49.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:49.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:49.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:49.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:49.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:49.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:49.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:49.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:49.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:49.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:49.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:50.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:50.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:50.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:50.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:50.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:50.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:50.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:50.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:50.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:50.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:50.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:50.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:50.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:50.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:50.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:50.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:50.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:50.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:50.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:50.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:50.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:50.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:50.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:50.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:50.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:50.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:50.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:50.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:50.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:50.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:50.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:50.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:50.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:50.971][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:50.976][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:50.978][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-07-23 22:26:50.979][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:50.993][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-07-23 22:26:50.997][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:51.001][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:51.003][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-07-23 22:26:51.005][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:51.018][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-07-23 22:26:51.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:51.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:51.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:51.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:51.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:51.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:51.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:51.117][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-07-23 22:26:51.119][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:51.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-07-23 22:26:51.123][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:51.137][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-07-23 22:26:51.139][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:51.140][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:51.142][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:51.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:51.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:51.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:51.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:51.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:51.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:51.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:51.338][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.339][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.343][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.352][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:51.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:51.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.358][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:51.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:51.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.367][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:51.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:51.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.370][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:51.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:51.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.377][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:51.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:51.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.381][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:51.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:51.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:51.395][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:51.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.398][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:51.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:51.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.405][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:51.406][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:51.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.408][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.410][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.415][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:51.417][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:51.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.419][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:51.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:51.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.429][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.436][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:51.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:51.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.440][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:51.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:51.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.447][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:51.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:51.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.450][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.452][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:51.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:51.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.457][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:51.458][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:51.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.460][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:51.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:51.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:51.523][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-07-23 22:26:51.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:51.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:51.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:51.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:51.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:51.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:51.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:51.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:51.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:51.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:51.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:51.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:51.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:51.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:51.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:51.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:51.583][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-07-23 22:26:51.585][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:51.586][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-07-23 22:26:51.589][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:51.602][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-07-23 22:26:51.604][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:51.605][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:51.607][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:51.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:51.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:51.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:51.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:51.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:51.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:51.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:51.624][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.625][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.628][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.634][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:51.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:51.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.638][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.791][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:51.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:51.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.795][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:51.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:51.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:51.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:51.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.805][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:51.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:51.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:51.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.815][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:51.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:51.822][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:51.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.824][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.826][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:51.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:51.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.829][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:51.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:51.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.836][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.837][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.845][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:51.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:51.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.849][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:51.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.855][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:51.856][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:51.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.859][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:51.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:51.866][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:51.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.868][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:51.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:51.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:51.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:51.924][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-07-23 22:26:51.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:51.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:51.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:51.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:51.971][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:51.976][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:51.978][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-23 22:26:51.979][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:51.982][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-23 22:26:51.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:51.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:51.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:51.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:51.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:51.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.682][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:52.688][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:52.691][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-23 22:26:52.694][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:52.697][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-23 22:26:52.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:52.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:52.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:52.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:52.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:52.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:52.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:52.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:52.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:52.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-23 22:26:53.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-23 22:26:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-23 22:26:53.383][biodb::testThat]
biodb.INFO [2024-07-23 22:26:53.384][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-07-23 22:26:53.385][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:53.386][biodb::testThat]
biodb.TRACE[2024-07-23 22:26:53.390][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:26:53.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:26:53.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:53.432][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:53.435][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:53.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-23 22:26:53.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:53.441][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-23 22:26:53.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.477][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:53.481][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:53.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-23 22:26:53.484][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:53.486][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-23 22:26:53.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:53.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.545][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-23 22:26:53.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.571][private$selectFields]
biodb.TRACE[2024-07-23 22:26:53.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:53.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:53.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.579][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.584][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.586][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.591][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.592][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:53.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.617][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-23 22:26:53.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.644][private$selectFields]
biodb.TRACE[2024-07-23 22:26:53.645][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:53.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:53.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.652][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.657][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.660][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.664][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.665][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:53.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-23 22:26:53.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.708][private$selectFields]
biodb.TRACE[2024-07-23 22:26:53.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:53.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:53.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.721][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.726][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:53.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.733][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.734][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:53.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:53.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-23 22:26:53.751][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-23 22:26:53.752][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-23 22:26:53.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:53.843][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:53.847][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:53.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-23 22:26:53.851][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:53.866][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-23 22:26:53.870][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:53.873][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:53.875][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-23 22:26:53.876][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:53.880][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-23 22:26:53.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:53.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:53.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:53.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:53.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:53.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:53.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:53.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:53.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:53.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:53.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:53.987][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-23 22:26:54.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.035][private$selectFields]
biodb.TRACE[2024-07-23 22:26:54.036][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:54.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:54.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.043][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.048][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.051][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.056][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.057][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.075][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-23 22:26:54.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.133][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.134][private$selectFields]
biodb.TRACE[2024-07-23 22:26:54.135][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:54.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:54.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.139][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.143][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.148][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.158][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.163][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.164][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-23 22:26:54.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.208][private$selectFields]
biodb.TRACE[2024-07-23 22:26:54.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:54.210][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:54.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.216][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.221][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.224][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.229][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.230][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:54.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.247][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-23 22:26:54.248][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-23 22:26:54.249][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-23 22:26:54.260][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-23 22:26:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-23 22:26:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-23 22:26:54.270][biodb::testThat]
biodb.INFO [2024-07-23 22:26:54.272][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-07-23 22:26:54.273][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:54.274][biodb::testThat]
biodb.TRACE[2024-07-23 22:26:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:26:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:26:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:54.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:54.321][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:54.325][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:54.326][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-23 22:26:54.328][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:54.330][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-23 22:26:54.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:54.362][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:54.366][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:54.368][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-23 22:26:54.369][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:54.371][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-23 22:26:54.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:54.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:54.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:54.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-23 22:26:54.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.459][private$selectFields]
biodb.TRACE[2024-07-23 22:26:54.460][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:54.462][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:54.463][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.468][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.473][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.475][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.480][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.482][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-23 22:26:54.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.529][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.531][private$selectFields]
biodb.TRACE[2024-07-23 22:26:54.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:54.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:54.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.539][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.544][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.546][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.551][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.552][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:54.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-23 22:26:54.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.595][private$selectFields]
biodb.TRACE[2024-07-23 22:26:54.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:54.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:54.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.604][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.609][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.612][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.617][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.618][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:54.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.635][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-23 22:26:54.636][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-23 22:26:54.638][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-23 22:26:54.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:54.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:54.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:54.691][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:54.692][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-23 22:26:54.694][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:54.696][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-23 22:26:54.699][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:54.703][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:54.705][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-23 22:26:54.706][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:54.708][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-23 22:26:54.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:54.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:54.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:54.799][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-23 22:26:54.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.827][private$selectFields]
biodb.TRACE[2024-07-23 22:26:54.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:54.829][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:54.830][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.835][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.840][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.843][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.848][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.849][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:54.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.866][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-23 22:26:54.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.895][private$selectFields]
biodb.TRACE[2024-07-23 22:26:54.897][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:54.898][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:54.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.904][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.908][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.911][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.916][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.917][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:54.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-23 22:26:54.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:54.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:54.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:54.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:54.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:54.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:54.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:54.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.960][private$selectFields]
biodb.TRACE[2024-07-23 22:26:54.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:54.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:54.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.973][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.978][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.980][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:54.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.985][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.986][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:54.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:54.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:54.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-23 22:26:55.003][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-23 22:26:55.005][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-23 22:26:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-23 22:26:55.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-23 22:26:55.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-23 22:26:55.027][biodb::testThat]
biodb.INFO [2024-07-23 22:26:55.028][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-07-23 22:26:55.030][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:55.031][biodb::testThat]
biodb.TRACE[2024-07-23 22:26:55.035][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-23 22:26:55.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-23 22:26:55.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:55.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:55.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:55.082][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:55.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-23 22:26:55.085][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:55.087][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-23 22:26:55.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:55.120][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:55.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:55.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-23 22:26:55.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:55.129][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-23 22:26:55.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:55.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:55.189][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-23 22:26:55.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.216][private$selectFields]
biodb.TRACE[2024-07-23 22:26:55.217][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:55.218][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:55.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.225][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.229][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.232][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.237][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.238][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:55.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.254][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-23 22:26:55.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.284][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.285][private$selectFields]
biodb.TRACE[2024-07-23 22:26:55.286][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:55.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:55.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.294][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.302][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.306][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.313][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.315][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:55.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-23 22:26:55.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.383][private$selectFields]
biodb.TRACE[2024-07-23 22:26:55.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:55.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:55.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.396][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.404][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.407][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.415][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.417][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:55.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.441][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-23 22:26:55.442][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-23 22:26:55.443][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-23 22:26:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:55.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:55.514][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:55.518][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:55.519][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-23 22:26:55.521][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:55.523][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-23 22:26:55.526][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:55.530][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:55.531][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-23 22:26:55.533][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:55.535][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-23 22:26:55.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:55.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:55.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:55.622][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-23 22:26:55.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.648][private$selectFields]
biodb.TRACE[2024-07-23 22:26:55.649][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:55.650][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:55.651][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.654][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.656][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.661][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.664][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:55.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.686][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-23 22:26:55.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.712][private$selectFields]
biodb.TRACE[2024-07-23 22:26:55.713][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:55.714][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:55.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.720][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.725][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.732][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.733][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:55.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.749][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-23 22:26:55.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.775][private$selectFields]
biodb.TRACE[2024-07-23 22:26:55.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-23 22:26:55.777][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-23 22:26:55.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.783][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.788][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.791][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-23 22:26:55.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.795][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.797][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-23 22:26:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-23 22:26:55.814][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-23 22:26:55.815][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-23 22:26:55.841][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-23 22:26:55.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-23 22:26:55.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-23 22:26:55.851][biodb::testThat]
biodb.INFO [2024-07-23 22:26:55.853][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-07-23 22:26:55.854][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:55.855][biodb::testThat]
biodb.DEBUG[2024-07-23 22:26:55.857][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-23 22:26:55.858][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:26:55.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-23 22:26:55.863][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:55.875][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2024-07-23 22:26:55.876][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:55.878][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:26:55.879][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:55.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:55.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:55.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:55.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:55.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:55.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:55.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:55.897][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:55.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:55.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.900][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:55.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:55.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.907][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:55.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:55.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.910][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.912][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:55.913][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:55.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.915][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:55.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:55.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.920][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:55.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:55.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.925][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:55.928][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:55.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.936][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.937][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:55.938][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:55.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.940][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.942][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.943][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:55.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.945][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.947][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:55.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:55.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.950][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.952][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:55.953][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:55.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.955][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:55.958][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:55.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.960][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:55.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:55.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:55.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:55.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:55.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:55.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:55.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:55.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:55.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:56.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:56.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:56.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:56.009][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-07-23 22:26:56.010][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-23 22:26:56.022][biodb::testThat]
biodb.INFO [2024-07-23 22:26:56.023][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-23 22:26:56.025][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:56.026][biodb::testThat]
biodb.DEBUG[2024-07-23 22:26:57.266][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-07-23 22:26:57.268][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-07-23 22:26:57.269][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-23 22:26:57.271][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-07-23 22:26:57.274][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-07-23 22:26:57.305][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-07-23 22:26:57.307][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:26:57.309][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-07-23 22:26:57.310][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-07-23 22:26:57.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:57.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:57.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:57.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:57.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:57.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:57.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:57.331][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.335][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.341][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:57.343][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:57.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.345][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.346][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:57.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:57.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.350][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:57.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:57.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.355][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:57.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:57.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.360][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.362][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:57.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:57.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.365][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.367][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:57.368][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:57.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.370][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.372][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.375][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.377][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:57.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:57.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.380][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.382][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:57.383][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:57.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.385][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:57.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:57.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.390][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:57.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:57.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:57.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:57.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:57.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:57.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:57.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:57.441][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.445][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.451][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:57.453][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:57.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.455][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.456][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:57.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:57.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.461][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:57.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:57.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.465][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:57.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:57.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:57.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:57.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.475][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:57.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:57.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:57.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:57.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.485][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:57.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:57.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.492][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:57.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:57.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.495][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.497][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:57.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:57.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.502][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:57.503][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:57.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.505][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.507][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:57.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:57.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.515][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.522][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:57.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:57.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.525][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:57.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:57.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.532][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:57.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:57.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.535][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:57.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:57.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.542][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:57.543][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:57.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.545][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:57.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:57.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:57.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:26:57.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:57.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:57.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:57.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:57.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:57.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:26:57.601][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.605][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.611][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:57.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:57.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.615][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:26:57.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:26:57.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.622][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:57.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:57.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.625][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:26:57.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:26:57.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:57.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:57.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:26:57.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:26:57.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.646][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:57.648][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:57.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.650][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:26:57.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:26:57.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:57.657][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:57.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.660][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.661][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:57.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:26:57.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.666][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:57.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:57.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.669][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.671][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:26:57.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:26:57.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.688][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:57.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:57.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.699][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:57.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.706][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:57.707][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:57.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.709][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:26:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:26:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:57.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:57.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.719][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:26:57.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:26:57.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:26:57.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:26:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:26:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:26:57.804][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-07-23 22:26:57.805][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-23 22:26:57.806][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-07-23 22:26:57.826][biodb::testThat]
biodb.INFO [2024-07-23 22:26:57.827][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-07-23 22:26:57.828][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:57.829][biodb::testThat]
biodb.INFO [2024-07-23 22:26:57.862][biodb::testThat]
biodb.INFO [2024-07-23 22:26:57.864][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-07-23 22:26:57.865][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:57.866][biodb::testThat]
biodb.INFO [2024-07-23 22:26:57.879][biodb::testThat]
biodb.INFO [2024-07-23 22:26:57.880][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-07-23 22:26:57.881][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:57.882][biodb::testThat]
biodb.DEBUG[2024-07-23 22:26:57.885][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:26:57.889][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:26:57.891][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2024-07-23 22:26:57.892][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:26:57.903][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2024-07-23 22:26:57.919][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:26:57.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:26:57.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.923][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:26:57.924][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.925][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:26:57.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:26:57.928][ef$get] fields variable is a list.
biodb.INFO [2024-07-23 22:26:57.930][biodb::testThat]
biodb.INFO [2024-07-23 22:26:57.931][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2024-07-23 22:26:57.933][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:26:57.934][biodb::testThat]
biodb.ERROR[2024-07-23 22:26:57.954][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-07-23 22:26:57.973][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-07-23 22:26:57.988][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-23 22:26:57.990][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-23 22:26:57.991][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-23 22:26:57.992][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-23 22:26:57.993][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:57.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:57.995][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:57.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:57.997][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:57.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-23 22:26:58.155][biodb::testContext]
biodb.INFO [2024-07-23 22:26:58.156][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:26:58.158][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-07-23 22:26:58.159][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:26:58.160][biodb::testContext]
biodb.INFO [2024-07-23 22:26:58.163][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:26:58.165][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-23 22:26:58.171][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:26:58.173][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-23 22:26:58.175][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-23 22:26:58.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.180][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-23 22:26:58.182][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-23 22:26:58.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.189][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-23 22:26:58.192][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-23 22:26:58.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.199][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-23 22:26:58.202][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-23 22:26:58.204][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-23 22:26:58.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.212][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-23 22:26:58.214][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-23 22:26:58.216][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-23 22:26:58.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.224][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-23 22:26:58.226][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-23 22:26:58.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.231][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-23 22:26:58.232][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-23 22:26:58.233][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-23 22:26:58.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.238][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-23 22:26:58.239][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-23 22:26:58.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.243][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-23 22:26:58.245][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-23 22:26:58.246][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-23 22:26:58.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.250][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:26:58.252][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-23 22:26:58.259][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-23 22:26:58.260][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-23 22:26:58.261][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-23 22:26:58.263][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-23 22:26:58.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.267][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-23 22:26:58.268][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-23 22:26:58.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.273][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-23 22:26:58.274][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-23 22:26:58.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.278][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-23 22:26:58.280][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-23 22:26:58.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.284][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-23 22:26:58.286][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-23 22:26:58.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.290][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-23 22:26:58.291][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-23 22:26:58.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.296][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:26:58.297][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-23 22:26:58.300][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-23 22:26:58.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.305][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-23 22:26:58.306][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-23 22:26:58.307][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-23 22:26:58.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.312][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-23 22:26:58.314][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.315][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-23 22:26:58.316][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.317][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:26:58.318][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.320][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.321][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.322][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.323][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:26:58.324][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:26:58.326][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.327][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-23 22:26:58.328][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:26:58.329][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.330][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.332][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:26:58.332][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:26:58.332][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:26:58.332][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:26:58.332][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:26:58.333][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:26:58.334][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:58.335][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:58.336][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:26:58.337][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:58.339][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:58.340][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.341][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.342][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:26:58.343][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:26:58.344][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.345][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.347][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-23 22:26:58.349][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.350][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:26:58.351][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.352][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:26:58.354][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.355][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.356][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.357][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.358][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:26:58.360][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:26:58.361][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.362][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-23 22:26:58.363][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:26:58.364][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.366][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.367][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:26:58.367][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:26:58.367][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:26:58.367][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:26:58.367][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:26:58.368][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:26:58.369][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:58.370][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:58.372][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:26:58.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:58.374][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:58.375][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.376][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.377][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:26:58.378][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:26:58.380][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.381][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.382][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-23 22:26:58.384][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.386][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-23 22:26:58.387][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.388][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:26:58.389][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.390][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.392][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.393][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.394][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:26:58.395][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:26:58.397][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.398][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-23 22:26:58.399][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:26:58.400][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.401][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.403][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.404][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:26:58.405][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:58.406][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:58.407][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:26:58.408][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:58.410][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:58.411][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.412][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.413][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:26:58.414][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:26:58.415][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.417][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.418][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-23 22:26:58.420][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.421][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:26:58.422][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.424][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:26:58.425][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.426][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.427][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.428][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.430][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:26:58.431][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:26:58.432][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.433][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-23 22:26:58.434][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:26:58.436][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.437][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:26:58.438][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.439][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:26:58.440][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:58.442][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:58.443][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:26:58.444][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:26:58.445][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:26:58.446][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:26:58.447][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.449][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:26:58.450][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:26:58.451][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:26:58.452][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:26:58.454][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:26:58.455][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.551][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-23 22:26:58.553][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-23 22:26:58.554][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-23 22:26:58.556][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-23 22:26:58.557][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:26:58.559][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-23 22:26:58.561][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-23 22:26:58.562][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-23 22:26:58.564][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-23 22:26:58.565][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-23 22:26:58.567][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:26:58.569][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-23 22:26:58.570][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-23 22:26:58.572][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-23 22:26:58.573][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-23 22:26:58.575][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-23 22:26:58.576][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-23 22:26:58.578][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-23 22:26:58.580][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:26:58.581][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-23 22:26:58.583][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-23 22:26:58.584][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-23 22:26:58.586][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-23 22:26:58.588][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-23 22:26:58.589][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-23 22:26:58.591][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-23 22:26:58.592][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-23 22:26:58.594][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-23 22:26:58.595][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-23 22:26:58.597][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-23 22:26:58.599][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-23 22:26:58.600][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-23 22:26:58.602][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-23 22:26:58.603][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-23 22:26:58.605][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-23 22:26:58.606][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-23 22:26:58.608][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-23 22:26:58.610][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-23 22:26:58.611][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-23 22:26:58.613][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-23 22:26:58.614][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-23 22:26:58.616][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-23 22:26:58.618][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-23 22:26:58.619][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-23 22:26:58.621][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-23 22:26:58.622][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-23 22:26:58.624][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-23 22:26:58.626][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-23 22:26:58.627][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-23 22:26:58.629][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-23 22:26:58.631][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-23 22:26:58.632][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-23 22:26:58.634][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-23 22:26:58.635][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-23 22:26:58.637][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-23 22:26:58.638][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-23 22:26:58.640][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-23 22:26:58.642][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-23 22:26:58.643][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-23 22:26:58.645][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-23 22:26:58.646][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-23 22:26:58.648][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-23 22:26:58.649][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-23 22:26:58.651][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-23 22:26:58.653][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-23 22:26:58.654][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-23 22:26:58.662][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:26:58.663][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:26:58.665][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-23 22:26:58.666][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-23 22:26:58.668][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-23 22:26:58.669][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-23 22:26:58.671][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-23 22:26:58.673][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-23 22:26:58.674][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-23 22:26:58.676][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-23 22:26:58.677][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-23 22:26:58.679][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-23 22:26:58.680][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-23 22:26:58.682][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-23 22:26:58.684][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-23 22:26:58.685][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-23 22:26:58.687][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-23 22:26:58.688][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-23 22:26:58.691][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:26:58.692][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:26:58.693][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.695][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:26:58.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:26:58.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:26:58.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:26:58.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:26:58.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:26:58.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:26:58.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.057][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-23 22:27:00.065][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-23 22:27:00.068][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.069][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.070][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.071][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:00.073][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.074][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.075][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.076][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-23 22:27:00.078][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-23 22:27:00.079][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:00.081][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.082][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-23 22:27:00.083][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-23 22:27:00.085][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-23 22:27:00.087][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.089][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:27:00.089][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:27:00.089][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:27:00.091][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-23 22:27:00.093][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:00.095][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:00.097][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:00.099][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:00.101][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:00.103][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.105][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-23 22:27:00.105][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-23 22:27:00.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:00.109][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:00.110][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.112][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-23 22:27:00.112][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-23 22:27:00.115][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:27:00.118][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:27:00.121][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-23 22:27:00.123][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:27:00.126][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:27:00.129][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:27:00.134][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-23 22:27:00.136][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-23 22:27:00.138][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-23 22:27:00.141][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-23 22:27:00.144][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:27:00.145][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:27:00.148][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-23 22:27:00.150][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-23 22:27:00.153][biodb::testThat]
biodb.INFO [2024-07-23 22:27:00.155][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2024-07-23 22:27:00.156][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:27:00.158][biodb::testThat]
biodb.DEBUG[2024-07-23 22:27:00.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-23 22:27:00.172][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:00.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-23 22:27:00.177][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:00.181][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-23 22:27:00.185][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:00.189][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:00.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-23 22:27:00.192][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:00.204][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-23 22:27:00.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.221][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:00.225][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:00.227][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-23 22:27:00.228][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:00.238][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-23 22:27:00.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.299][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:00.302][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:00.304][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-23 22:27:00.306][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:00.308][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-23 22:27:00.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.325][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:00.328][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:00.330][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-23 22:27:00.332][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:00.334][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-23 22:27:00.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.366][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:00.370][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:00.371][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-23 22:27:00.373][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:00.375][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-23 22:27:00.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.397][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:00.400][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:00.402][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-23 22:27:00.403][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:00.405][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-23 22:27:00.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:00.426][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:00.427][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2024-07-23 22:27:00.429][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:00.442][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2024-07-23 22:27:00.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-23 22:27:00.465][biodb::testThat]
biodb.INFO [2024-07-23 22:27:00.466][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2024-07-23 22:27:00.467][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:27:00.468][biodb::testThat]
biodb.DEBUG[2024-07-23 22:27:00.472][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:00.476][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:00.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2024-07-23 22:27:00.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:00.491][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2024-07-23 22:27:00.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.509][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:00.513][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:00.515][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2024-07-23 22:27:00.516][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:00.520][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2024-07-23 22:27:00.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:00.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-23 22:27:00.542][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-23 22:27:00.543][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-23 22:27:00.544][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-23 22:27:00.546][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-23 22:27:00.547][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:00.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:00.549][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.551][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-23 22:27:00.590][biodb::testContext]
biodb.INFO [2024-07-23 22:27:00.592][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:27:00.593][biodb::testContext] Test context - Test web services
biodb.INFO [2024-07-23 22:27:00.594][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:27:00.595][biodb::testContext]
biodb.INFO [2024-07-23 22:27:00.598][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:27:00.600][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-23 22:27:00.605][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:27:00.607][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-23 22:27:00.608][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-23 22:27:00.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.612][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-23 22:27:00.614][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-23 22:27:00.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.618][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-23 22:27:00.619][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-23 22:27:00.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.624][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-23 22:27:00.625][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-23 22:27:00.626][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-23 22:27:00.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.630][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-23 22:27:00.632][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-23 22:27:00.633][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-23 22:27:00.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.637][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-23 22:27:00.638][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-23 22:27:00.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.643][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-23 22:27:00.644][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-23 22:27:00.645][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-23 22:27:00.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.650][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-23 22:27:00.651][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-23 22:27:00.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.656][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-23 22:27:00.657][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-23 22:27:00.658][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-23 22:27:00.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.663][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:27:00.664][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-23 22:27:00.665][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-23 22:27:00.666][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-23 22:27:00.668][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-23 22:27:00.669][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-23 22:27:00.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.673][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-23 22:27:00.675][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-23 22:27:00.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.679][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-23 22:27:00.680][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-23 22:27:00.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.685][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-23 22:27:00.686][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-23 22:27:00.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.691][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-23 22:27:00.692][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-23 22:27:00.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.697][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-23 22:27:00.698][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-23 22:27:00.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.703][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:27:00.705][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-23 22:27:00.709][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-23 22:27:00.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.716][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-23 22:27:00.718][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-23 22:27:00.720][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-23 22:27:00.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.728][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-23 22:27:00.731][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.732][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-23 22:27:00.733][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.734][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:00.736][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.737][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.738][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.739][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.740][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:27:00.742][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:00.743][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.744][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-23 22:27:00.745][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:00.746][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.748][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.749][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:27:00.749][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:27:00.749][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:27:00.749][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:27:00.749][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:27:00.750][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:27:00.751][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:00.752][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:00.754][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:00.755][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:00.756][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:00.757][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.758][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.759][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:00.760][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:00.761][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.763][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.764][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-23 22:27:00.766][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.767][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:27:00.769][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.770][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:00.771][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.772][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.773][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.774][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.776][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:27:00.777][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:00.778][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.779][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-23 22:27:00.780][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:00.782][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.783][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.784][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:27:00.784][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:27:00.784][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:27:00.784][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:27:00.784][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:27:00.785][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:27:00.786][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:00.787][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:00.789][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:00.790][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:00.791][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:00.792][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.793][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.794][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:00.795][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:00.796][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.798][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.799][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-23 22:27:00.801][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.802][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-23 22:27:00.803][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.805][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:00.806][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.807][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.808][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.809][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.811][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:27:00.812][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:00.813][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.814][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-23 22:27:00.815][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:00.816][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.818][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.819][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.820][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:27:00.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:00.822][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:00.823][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:00.825][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:00.826][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:00.827][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.828][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.829][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:00.830][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:00.831][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.832][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.834][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-23 22:27:00.836][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.837][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:27:00.838][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.839][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:00.841][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.842][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.843][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.844][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.845][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:27:00.846][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:00.848][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.849][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-23 22:27:00.850][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:00.851][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.852][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:00.854][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.855][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:27:00.856][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:00.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:00.858][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:00.859][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:00.860][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:00.862][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:00.863][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.864][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:00.865][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:00.866][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:00.867][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:00.869][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:27:00.870][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:00.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:00.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:00.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:00.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:00.969][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-23 22:27:00.970][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-23 22:27:00.972][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-23 22:27:00.973][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-23 22:27:00.975][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:27:00.976][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-23 22:27:00.978][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-23 22:27:00.980][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-23 22:27:00.981][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-23 22:27:00.983][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-23 22:27:00.984][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:27:00.986][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-23 22:27:00.987][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-23 22:27:00.989][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-23 22:27:00.990][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-23 22:27:00.992][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-23 22:27:00.993][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-23 22:27:00.995][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-23 22:27:00.996][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:27:00.998][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-23 22:27:01.000][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-23 22:27:01.001][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-23 22:27:01.003][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-23 22:27:01.004][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-23 22:27:01.006][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-23 22:27:01.008][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-23 22:27:01.009][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-23 22:27:01.011][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-23 22:27:01.012][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-23 22:27:01.014][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-23 22:27:01.015][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-23 22:27:01.017][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-23 22:27:01.018][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-23 22:27:01.020][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-23 22:27:01.022][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-23 22:27:01.023][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-23 22:27:01.025][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-23 22:27:01.026][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-23 22:27:01.028][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-23 22:27:01.029][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-23 22:27:01.031][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-23 22:27:01.032][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-23 22:27:01.034][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-23 22:27:01.036][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-23 22:27:01.037][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-23 22:27:01.039][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-23 22:27:01.040][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-23 22:27:01.042][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-23 22:27:01.043][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-23 22:27:01.045][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-23 22:27:01.046][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-23 22:27:01.048][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-23 22:27:01.050][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-23 22:27:01.051][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-23 22:27:01.053][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-23 22:27:01.054][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-23 22:27:01.056][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-23 22:27:01.057][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-23 22:27:01.059][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-23 22:27:01.060][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-23 22:27:01.062][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-23 22:27:01.064][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-23 22:27:01.065][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-23 22:27:01.067][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-23 22:27:01.068][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-23 22:27:01.070][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-23 22:27:01.071][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:27:01.073][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:27:01.074][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-23 22:27:01.076][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-23 22:27:01.078][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-23 22:27:01.079][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-23 22:27:01.081][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-23 22:27:01.082][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-23 22:27:01.084][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-23 22:27:01.085][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-23 22:27:01.087][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-23 22:27:01.088][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-23 22:27:01.090][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-23 22:27:01.092][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-23 22:27:01.093][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-23 22:27:01.095][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-23 22:27:01.096][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-23 22:27:01.098][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-23 22:27:01.100][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:27:01.101][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:27:01.102][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.105][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.250][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-23 22:27:01.252][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-23 22:27:01.254][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.255][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.256][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.258][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:01.259][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.260][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.261][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.262][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-23 22:27:01.264][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-23 22:27:01.265][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:01.266][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.267][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-23 22:27:01.269][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-23 22:27:01.270][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-23 22:27:01.272][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.273][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:27:01.273][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:27:01.273][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:27:01.274][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-23 22:27:01.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:01.276][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:01.278][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:01.279][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:01.280][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:01.281][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.288][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-23 22:27:01.288][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-23 22:27:01.289][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:01.290][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:01.292][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.293][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-23 22:27:01.293][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-23 22:27:01.294][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:27:01.296][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:27:01.298][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-23 22:27:01.299][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:27:01.301][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:27:01.303][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:27:01.306][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-23 22:27:01.307][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-23 22:27:01.309][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-23 22:27:01.311][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-23 22:27:01.312][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:27:01.313][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:27:01.315][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-23 22:27:01.316][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-23 22:27:01.318][biodb::testThat]
biodb.INFO [2024-07-23 22:27:01.319][biodb::testThat] Running test function  test.chebi.wsGetLiteEntity  (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-07-23 22:27:01.320][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:27:01.321][biodb::testThat]
biodb.DEBUG[2024-07-23 22:27:01.325][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-23 22:27:01.329][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:01.331][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-23 22:27:01.333][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:01.335][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-23 22:27:01.339][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:01.343][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:01.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-23 22:27:01.346][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:01.359][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2024-07-23 22:27:01.369][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-23 22:27:01.370][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-23 22:27:01.372][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-23 22:27:01.373][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-23 22:27:01.374][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:01.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:01.376][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.378][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-23 22:27:01.513][biodb::testContext]
biodb.INFO [2024-07-23 22:27:01.515][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:27:01.517][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-07-23 22:27:01.519][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-23 22:27:01.521][biodb::testContext]
biodb.INFO [2024-07-23 22:27:01.526][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:27:01.529][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-23 22:27:01.538][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:27:01.540][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-23 22:27:01.542][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-23 22:27:01.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.548][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-23 22:27:01.556][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-23 22:27:01.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.563][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-23 22:27:01.565][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-23 22:27:01.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.574][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-23 22:27:01.576][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-23 22:27:01.578][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-23 22:27:01.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.585][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-23 22:27:01.587][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-23 22:27:01.589][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-23 22:27:01.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.596][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-23 22:27:01.598][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-23 22:27:01.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.606][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-23 22:27:01.608][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-23 22:27:01.610][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-23 22:27:01.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.617][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-23 22:27:01.619][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-23 22:27:01.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.626][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-23 22:27:01.632][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-23 22:27:01.634][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-23 22:27:01.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.640][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:27:01.642][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-23 22:27:01.644][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-23 22:27:01.646][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-23 22:27:01.648][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-23 22:27:01.650][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-23 22:27:01.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.658][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-23 22:27:01.660][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-23 22:27:01.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.667][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-23 22:27:01.670][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-23 22:27:01.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.677][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-23 22:27:01.679][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-23 22:27:01.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.687][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-23 22:27:01.689][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-23 22:27:01.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.697][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-23 22:27:01.699][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-23 22:27:01.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.704][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-23 22:27:01.706][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-23 22:27:01.709][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-23 22:27:01.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.714][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-23 22:27:01.715][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-23 22:27:01.716][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-23 22:27:01.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.721][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-23 22:27:01.723][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.724][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-23 22:27:01.725][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.726][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:01.728][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.729][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.730][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.731][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.733][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:27:01.734][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:01.735][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.736][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-23 22:27:01.737][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:01.739][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.740][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.741][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:27:01.741][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:27:01.741][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:27:01.741][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:27:01.741][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:27:01.742][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:27:01.744][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:01.745][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:01.746][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:01.747][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:01.748][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:01.749][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.751][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.752][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:01.753][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:01.754][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.755][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.757][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-23 22:27:01.759][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.760][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:27:01.761][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.762][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:01.764][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.765][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.766][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.767][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.768][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:27:01.770][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:01.771][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.772][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-23 22:27:01.773][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:01.775][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.776][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.777][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:27:01.777][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:27:01.777][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:27:01.777][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-23 22:27:01.777][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-23 22:27:01.778][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:27:01.779][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:01.781][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:01.782][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:01.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:01.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:01.785][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.786][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.788][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:01.789][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:01.790][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.791][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.792][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-23 22:27:01.794][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.796][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-23 22:27:01.797][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.798][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:01.799][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.801][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.802][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.803][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.804][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-23 22:27:01.805][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:01.807][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.808][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-23 22:27:01.809][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:01.810][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.811][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.813][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.814][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:27:01.815][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:01.816][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:01.817][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:01.819][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:01.820][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:01.821][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.822][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.823][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:01.824][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:01.825][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.827][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.828][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-23 22:27:01.830][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.831][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-23 22:27:01.832][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.834][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:01.835][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.836][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.837][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.838][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.840][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-23 22:27:01.841][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:01.842][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.843][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-23 22:27:01.845][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:01.846][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.847][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:01.848][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.849][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-23 22:27:01.851][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:01.852][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:01.853][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:01.854][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:01.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:01.856][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:01.858][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.859][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:01.860][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:01.861][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:01.862][self$setPropertyValue]
biodb.DEBUG[2024-07-23 22:27:01.864][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:27:01.865][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:01.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:01.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:01.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:01.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:01.971][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-23 22:27:01.972][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-23 22:27:01.974][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-23 22:27:01.975][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-23 22:27:01.977][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:27:01.978][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-23 22:27:01.980][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-23 22:27:01.981][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-23 22:27:01.983][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-23 22:27:01.984][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-23 22:27:01.986][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:27:01.987][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-23 22:27:01.989][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-23 22:27:01.991][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-23 22:27:01.992][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-23 22:27:01.994][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-23 22:27:01.995][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-23 22:27:01.997][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-23 22:27:01.998][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:27:02.000][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-23 22:27:02.001][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-23 22:27:02.003][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-23 22:27:02.004][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-23 22:27:02.006][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-23 22:27:02.007][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-23 22:27:02.009][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-23 22:27:02.010][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-23 22:27:02.012][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-23 22:27:02.013][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-23 22:27:02.015][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-23 22:27:02.017][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-23 22:27:02.018][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-23 22:27:02.020][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-23 22:27:02.021][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-23 22:27:02.023][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-23 22:27:02.024][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-23 22:27:02.026][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-23 22:27:02.027][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-23 22:27:02.029][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-23 22:27:02.030][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-23 22:27:02.032][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-23 22:27:02.033][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-23 22:27:02.035][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-23 22:27:02.037][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-23 22:27:02.038][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-23 22:27:02.040][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-23 22:27:02.041][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-23 22:27:02.043][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-23 22:27:02.045][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-23 22:27:02.046][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-23 22:27:02.048][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-23 22:27:02.049][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-23 22:27:02.051][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-23 22:27:02.052][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-23 22:27:02.054][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-23 22:27:02.056][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-23 22:27:02.057][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-23 22:27:02.059][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-23 22:27:02.060][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-23 22:27:02.062][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-23 22:27:02.063][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-23 22:27:02.065][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-23 22:27:02.067][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-23 22:27:02.068][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-23 22:27:02.070][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-23 22:27:02.071][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-23 22:27:02.073][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:27:02.074][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:27:02.076][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-23 22:27:02.077][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-23 22:27:02.079][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-23 22:27:02.081][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-23 22:27:02.082][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-23 22:27:02.084][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-23 22:27:02.085][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-23 22:27:02.087][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-23 22:27:02.088][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-23 22:27:02.090][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-23 22:27:02.091][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-23 22:27:02.093][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-23 22:27:02.094][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-23 22:27:02.096][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-23 22:27:02.098][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-23 22:27:02.099][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-23 22:27:02.102][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-23 22:27:02.103][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-23 22:27:02.104][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.106][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-23 22:27:02.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-23 22:27:02.242][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-23 22:27:02.243][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-23 22:27:02.245][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:02.247][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-23 22:27:02.248][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:02.249][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-23 22:27:02.250][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:02.252][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-23 22:27:02.253][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:02.254][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-23 22:27:02.255][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-23 22:27:02.257][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-23 22:27:02.258][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:02.259][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-23 22:27:02.260][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-23 22:27:02.261][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-23 22:27:02.263][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-23 22:27:02.264][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-23 22:27:02.264][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-23 22:27:02.264][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-23 22:27:02.265][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-23 22:27:02.266][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:02.268][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:02.269][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-23 22:27:02.270][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-23 22:27:02.271][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-23 22:27:02.272][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-23 22:27:02.273][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-23 22:27:02.273][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-23 22:27:02.275][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-23 22:27:02.276][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-23 22:27:02.277][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-23 22:27:02.278][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-23 22:27:02.278][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-23 22:27:02.280][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-23 22:27:02.281][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-23 22:27:02.283][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-23 22:27:02.285][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-23 22:27:02.287][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-23 22:27:02.288][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-23 22:27:02.292][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-23 22:27:02.293][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-23 22:27:02.294][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-23 22:27:02.296][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-23 22:27:02.298][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:27:02.299][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-23 22:27:02.300][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-23 22:27:02.302][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-23 22:27:02.304][biodb::testThat]
biodb.INFO [2024-07-23 22:27:02.305][biodb::testThat] Running test function  test.chebi.encoding.issue.in.xml  (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-07-23 22:27:02.306][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-23 22:27:02.307][biodb::testThat]
biodb.DEBUG[2024-07-23 22:27:02.310][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-23 22:27:02.315][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:02.322][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-23 22:27:02.324][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:02.327][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-23 22:27:02.330][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-23 22:27:02.333][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-23 22:27:02.335][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-23 22:27:02.337][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:02.339][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-07-23 22:27:02.343][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-07-23 22:27:02.344][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-23 22:27:02.346][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-07-23 22:27:02.348][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-23 22:27:02.365][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2024-07-23 22:27:02.366][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-23 22:27:02.368][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-23 22:27:02.369][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-23 22:27:02.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-23 22:27:02.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:02.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:02.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:02.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:02.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:02.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-23 22:27:05.548][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:27:05.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:27:05.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.552][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:27:05.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:27:05.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.559][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:27:05.561][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:27:05.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.564][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.567][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-23 22:27:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-23 22:27:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.575][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:27:05.576][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:27:05.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.579][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-23 22:27:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-23 22:27:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-23 22:27:05.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-23 22:27:05.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.589][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.591][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-23 22:27:05.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-23 22:27:05.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.594][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.596][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:27:05.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:27:05.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.600][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.601][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:27:05.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-23 22:27:05.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.606][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:27:05.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:27:05.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.610][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-23 22:27:05.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-23 22:27:05.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:27:05.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:27:05.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.620][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:27:05.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-23 22:27:05.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.626][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:27:05.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:27:05.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.630][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-23 22:27:05.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-23 22:27:05.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.637][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:27:05.638][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:27:05.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-23 22:27:05.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-23 22:27:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.647][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:27:05.648][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:27:05.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.651][ef$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-23 22:27:05.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-23 22:27:05.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:27:05.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:27:05.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:27:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:27:05.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:27:05.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:27:05.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-23 22:27:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-23 22:27:05.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:27:05.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:27:05.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:27:05.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:27:05.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:27:05.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:27:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:27:05.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:27:05.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:27:05.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:27:05.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-23 22:27:05.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-23 22:27:05.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-23 22:27:05.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-23 22:27:05.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-23 22:27:05.706][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-07-23 22:27:05.712][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-23 22:27:05.714][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-23 22:27:05.715][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-23 22:27:05.716][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-23 22:27:05.717][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-23 22:27:05.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-23 22:27:05.719][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-23 22:27:05.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-23 22:27:05.722][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-23 22:27:05.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 358 ]
> 
> proc.time()
   user  system elapsed 
  20.96    1.29   56.06

Example timings

biodbChebi.Rcheck/biodbChebi-Ex.timings

name	user	system	elapsed
ChebiConn	4.70	2.72	113.43
ChebiEntry	1.05	0.06	1.16