Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-05-31 19:30:58 -0400 (Fri, 31 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4669 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4404 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4431 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4384 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 166/2233 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
bioassayR 1.43.0 (landing page) Daniela Cassol
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
To the developers/maintainers of the bioassayR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bioassayR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: bioassayR |
Version: 1.43.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bioassayR |
StartedAt: 2024-05-30 22:12:32 -0400 (Thu, 30 May 2024) |
EndedAt: 2024-05-30 22:13:37 -0400 (Thu, 30 May 2024) |
EllapsedTime: 65.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bioassayR ### ############################################################################## ############################################################################## * checking for file ‘bioassayR/DESCRIPTION’ ... OK * preparing ‘bioassayR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘bioassayR.Rmd’ using rmarkdown Quitting from lines 30-37 [setup] (bioassayR.Rmd) Error: processing vignette 'bioassayR.Rmd' failed with diagnostics: there is no package called 'cellHTS2' --- failed re-building ‘bioassayR.Rmd’ #"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitr); knit2html('bioassayR.Rmd',options=c('toc',markdown::markdownHTMLOptions(TRUE)))" #"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitr); knit('bioassayR.Rmd')" #pandoc --self-contained --output bioassayR.html -H header.html --from markdown --smart --table-of-contents --template html.template bioassayR.md; #"/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(knitrBootstrap); knit_bootstrap('bioassayR.Rmd',show_code=TRUE)" "/Library/Frameworks/R.framework/Resources/bin/Rscript" -e "library(rmarkdown); library(BiocStyle); rmarkdown::render('bioassayR.Rmd')" Attaching package: ‘BiocStyle’ The following objects are masked from ‘package:rmarkdown’: html_document, md_document, pdf_document processing file: bioassayR.Rmd 1/143 2/143 [style] 3/143 4/143 [setup] Error in `library()`: ! there is no package called 'cellHTS2' Backtrace: 1. base::suppressPackageStartupMessages(...) 3. base::library(cellHTS2) Quitting from lines 30-37 [setup] (bioassayR.Rmd) Execution halted make: *** [all] Error 1 Error in tools::buildVignettes(dir = ".", tangle = TRUE) : running 'make' failed Execution halted